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qs_1_scaffold_3739

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_1_scaffold_3739_1
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2..727
DNA (726bp) protein (242aa)
proteasome subunit alpha (EC:3.4.25.1)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {
Proteasome subunit alpha n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NVQ5_HALMD
qs_1_scaffold_3739_2
Natrinema pallidum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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720..1406
DNA (687bp) protein (229aa)
Proteasome subunit beta {ECO:0000256|HAMAP-Rule:MF_02113}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_02113};; 20S proteasome beta subunit {ECO:0000256|HAMAP-Rule:MF_02113}; Proteasome core protein PsmB {
proteasome endopeptidase complex subunit beta (EC:3.4.25.1)
Proteasome subunit beta n=1 Tax=Natrinema pallidum DSM 3751 RepID=L9YME3_9EURY
qs_1_scaffold_3739_3
unknown

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1499..1627
DNA (129bp) protein (43aa)

This feature has no annotations

qs_1_scaffold_3739_trna_1
unknown

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1613..1687
DNA (75bp)
transferRNA
qs_1_scaffold_3739_4
Natronobacterium gregoryi, Natronobacterium, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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1932..2582
DNA (651bp) protein (217aa)
Site-specific recombinase XerD n=1 Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=L0AKQ9_NATGS
site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:AFZ73762.1}; XerC/D-like integrase {ECO:0000313|EMBL:ELY65820.1}; TaxID=797304 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbace
qs_1_scaffold_3739_5
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2716..3030
DNA (315bp) protein (105aa)
rad25a; DNA repair helicase Rad25 (EC:3.6.4.12)
Type III restriction protein res subunit n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0JZI7_9EURY
Type III restriction protein res subunit {ECO:0000313|EMBL:EMA13354.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula
qs_1_scaffold_3739_6
Halobacterium salinarum, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3017..4360
DNA (1344bp) protein (448aa)
DUF790 family protein n=2 Tax=Halobacterium salinarum RepID=B0R8W1_HALS3
hypothetical protein
DUF790 family protein {ECO:0000313|EMBL:CAP15150.1}; TaxID=478009 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium salinarum (st
qs_1_scaffold_3739_7
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(4384..4815)
DNA (432bp) protein (144aa)
Homolog to endonuclease VapC n=2 Tax=Haloquadratum walsbyi RepID=Q18EN3_HALWD
hypothetical protein
Homolog to endonuclease VapC {ECO:0000313|EMBL:CAJ53590.2}; TaxID=362976 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi (s
qs_1_scaffold_3739_8
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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5158..5421
DNA (264bp) protein (88aa)
Transposase n=1 Tax=Haloarcula californiae ATCC 33799 RepID=M0KFS0_9EURY
tnp; transposase
Transposase {ECO:0000313|EMBL:EMA19728.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula californiae ATCC 33799.;"
qs_1_scaffold_3739_9
Natronococcus amylolyticus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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5579..6433
DNA (855bp) protein (285aa)
ABC transporter-related protein n=1 Tax=Natronococcus amylolyticus DSM 10524 RepID=L9X3T7_9EURY
ABC transporter-related protein {ECO:0000313|EMBL:ELY56121.1}; TaxID=1227497 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus amylolyt
ABC transporter-related protein
qs_1_scaffold_3739_10
unknown

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6433..6540
DNA (108bp) protein (36aa)

This feature has no annotations

qs_1_scaffold_3739_11
Natrinema versiforme, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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6537..7346
DNA (810bp) protein (270aa)
ABC-2 type transporter n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9Y1T7_9EURY
ABC-2 type transporter {ECO:0000313|EMBL:ELY68034.1}; TaxID=1227496 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema versiforme JCM 10478.;"
ABC-type transport system permease protein
qs_1_scaffold_3739_12
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(7435..7608)
DNA (174bp) protein (58aa)
Uncharacterized protein n=2 Tax=Haloarcula RepID=Q5UYD8_HALMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMA15393.1}; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula californiae ATCC
qs_1_scaffold_3739_13

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7714..8295
DNA (582bp) protein (194aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=uncultured archaeon A07HN63 RepID=V4Y495_9ARCH
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:ESS09618.1}; TaxID=1412873 species="Archaea; environmental samples.;" source="uncultured archaeon A07HN63.;"
hypothetical protein
qs_1_scaffold_3739_14
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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8261..8674
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=haloarchaeon 3A1_DGR RepID=T0SQT2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ERG91119.1}; TaxID=1238424 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi J07HQW
hypothetical protein
qs_1_scaffold_3739_15
Natrialba magadii, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(8676..9416)
DNA (741bp) protein (247aa)
transposase IS605 n=1 Tax=Halorubrum sp. T3 RepID=UPI0003772549
transposase, IS605 OrfB family
Transposase, IS605 OrfB family {ECO:0000313|EMBL:ADD05877.1}; Transposase, IS605 OrfB family protein {ECO:0000313|EMBL:ELY30615.1}; TaxID=547559 species="Archaea; Euryarchaeota; Halobacteria; Natrialb
qs_1_scaffold_3739_16
Halorubrum arcis, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(9383..9952)
DNA (570bp) protein (190aa)
IS1341-type transposase n=1 Tax=Halorubrum arcis JCM 13916 RepID=M0PLW7_9EURY
IS1341-type transposase {ECO:0000313|EMBL:EMA71046.1}; TaxID=1230455 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum arcis JCM 13916.;"
IS1341-type transposase
Displaying 17 items

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