ggKbase home page

qs_1_scaffold_405

Search features with annotation key words

Displaying items 1-30 of 47 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_1_scaffold_405_1
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2..208
DNA (207bp) protein (69aa)
NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D n=1 Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U3A3A5_9EURY
NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D {ECO:0000313|EMBL:GAD52134.1}; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteri
NADH:ubiquinone oxidoreductase 49 kD subunit 7
qs_1_scaffold_405_2
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

760..1080
DNA (321bp) protein (107aa)
PhiH1 repressor-like protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P3Z4_HALMD
PhiH1 repressor-like protein
PhiH1 repressor-like protein {ECO:0000313|EMBL:ACV47816.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukoha
qs_1_scaffold_405_3
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1108..1368
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KTR6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA23120.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula amylolytica JCM
hypothetical protein
qs_1_scaffold_405_trna_3
unknown

Not on your lists

comp(1501..1571)
DNA (71bp)
transferRNA
qs_1_scaffold_405_4
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1618..2565)
DNA (948bp) protein (316aa)
Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA pseud
Probable tRNA pseudouridine synthase B n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LU96_9EURY
H/ACA RNA-protein complex component Cbf5p
qs_1_scaffold_405_5
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2566..3144)
DNA (579bp) protein (193aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00239}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00239};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00239};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:
Cytidylate kinase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8JA17_HALJB
cytidylate kinase
qs_1_scaffold_405_6
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3334..4254)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P427_HALMD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV47849.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohataei
qs_1_scaffold_405_7
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4281..4934)
DNA (654bp) protein (218aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
Adenylate kinase n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0L8D8_HALJP
adenylate kinase
qs_1_scaffold_405_trna_1
unknown

Not on your lists

5058..5174
DNA (117bp)
transferRNA
qs_1_scaffold_405_8
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5760..6032)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KFZ2_HALAR
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACV46448.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrob
qs_1_scaffold_405_9
Halonotius sp. J07HN4, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6115..6771)
DNA (657bp) protein (219aa)
K+ transport system, NAD-binding component n=3 Tax=Archaea RepID=U1NF50_9EURY
K+ transport system, NAD-binding component {ECO:0000313|EMBL:ERH05405.1}; TaxID=1070774 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halonotius.;" source="Halonotius s
potassium transporter Trk
qs_1_scaffold_405_10
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6843..7145
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D868_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ30354.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
qs_1_scaffold_405_11
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7145..8974
DNA (1830bp) protein (610aa)
ATPase RIL n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D670_9EURY
ATPase RIL {ECO:0000313|EMBL:ELZ30353.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.;"
ATPase RIL
qs_1_scaffold_405_12
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9189..10235
DNA (1047bp) protein (349aa)
Transposase, is605 orfb family n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LYE3_9EURY
Transposase, is605 orfb family {ECO:0000313|EMBL:EMA37374.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.
transposase, IS605 OrfB family
qs_1_scaffold_405_13
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10496..11479
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J2ZLG2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN61590.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
ornithine cyclodeaminase/mu-crystallin
qs_1_scaffold_405_14
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11476..11736)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Halobacterium sp. DL1 RepID=G4IGM8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AHG04452.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp. DL1.;"
hypothetical protein
qs_1_scaffold_405_15

Not on your lists

comp(11869..12402)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=uncultured archaeon A07HN63 RepID=V4YAS6_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:ESS09989.1}; TaxID=1412873 species="Archaea; environmental samples.;" source="uncultured archaeon A07HN63.;"
qs_1_scaffold_405_trna_2
unknown

Not on your lists

comp(12805..12875)
DNA (71bp)
transferRNA
qs_1_scaffold_405_16
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13073..13930
DNA (858bp) protein (286aa)
Putative uncharacterized protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QZV7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EFW89851.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophil
conserved hypothetical protein, putative RNA methyltransferase (DUF171) rbh
qs_1_scaffold_405_17
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


13938..14963
DNA (1026bp) protein (342aa)
50S ribosomal protein L3 n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KBJ2_9EURY
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00023038}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;"
rplC; 50S ribosomal protein L3P
qs_1_scaffold_405_18
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


14971..15723
DNA (753bp) protein (251aa)
50S ribosomal protein L4 n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P4C1_HALMD
50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukoha
qs_1_scaffold_405_19
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


15720..15971
DNA (252bp) protein (84aa)
50S ribosomal protein L23P n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P4C2_HALMD
50S ribosomal protein L23
50S ribosomal protein L23P {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=634497 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula hispanica
qs_1_scaffold_405_20
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


15974..16696
DNA (723bp) protein (241aa)
50S ribosomal protein L2 n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0JCB9_HALVA
rpl2p; 50S ribosomal protein L2P
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;"
qs_1_scaffold_405_21
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


16696..17118
DNA (423bp) protein (141aa)
30S ribosomal protein S19 n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=RS19_NATPD
rps19p; 30S ribosomal protein S19P
30S ribosomal protein S19 {ECO:0000255|HAMAP-Rule:MF_00531}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaon
qs_1_scaffold_405_22
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17122..17580
DNA (459bp) protein (153aa)
50S ribosomal protein L22P n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PKT1_9EURY
50S ribosomal protein L17e (L22p)
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004007}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.
qs_1_scaffold_405_23
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


17580..18542
DNA (963bp) protein (321aa)
30S ribosomal protein S3 n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D957_HALXS
30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.;"
qs_1_scaffold_405_24

Not on your lists


18539..18751
DNA (213bp) protein (71aa)
LSU ribosomal protein L29P n=1 Tax=uncultured archaeon A07HR60 RepID=V4Y8E5_9ARCH
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR60.;"
50S ribosomal protein L29
qs_1_scaffold_405_25
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18751..19083
DNA (333bp) protein (111aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
Ribonuclease P protein component 1 n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CIS7_9EURY
ribonuclease P
qs_1_scaffold_405_26
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


19074..19430
DNA (357bp) protein (119aa)
30S ribosomal protein S17P n=3 Tax=Haloarcula RepID=G0HW43_HALHT
30S ribosomal protein S17
30S ribosomal protein S17P {ECO:0000313|EMBL:AEM57736.1}; TaxID=634497 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula hispanica (str
qs_1_scaffold_405_27
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


19430..19828
DNA (399bp) protein (133aa)
50S ribosomal protein L14 n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=RL14_NATPD
rpl14p; 50S ribosomal protein L14P
50S ribosomal protein L14 {ECO:0000255|HAMAP-Rule:MF_01367}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaon
Displaying items 1-30 of 47 in total

View Taxonomy