ggKbase home page
Advanced Search
Search Help

QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 651-700 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_1549 16 16159 bp 54.08 21.19 69.16
qs_1_scaffold_790
Domain: Viridiplantae (62.5%)
8 15508 bp 53.59 20.67 69.10
qs_1_scaffold_6862 3 3342 bp 54.67 17.18 69.03
qs_1_scaffold_8409
Phylum: Chlorophyta (50%)
4 5585 bp 54.90 19.36 69.02
qs_1_scaffold_1286 10 12447 bp 54.61 20.64 68.96
qs_1_scaffold_9099
Phylum: Chlorophyta (66.67%)
3 2741 bp 55.34 16.49 68.95
qs_1_scaffold_2442 14 15898 bp 55.14 20.61 68.95
qs_1_scaffold_459 18 17780 bp 53.92 21.07 68.94
qs_1_scaffold_673 28 24624 bp 54.83 20.70 68.91
qs_1_scaffold_1009 32 32439 bp 54.94 20.71 68.86
qs_1_scaffold_7573 8 7114 bp 56.52 20.35 68.82
qs_1_scaffold_1631 19 13397 bp 53.48 20.31 68.80
qs_1_scaffold_11983
Phylum: Chlorophyta (50%)
4 4147 bp 56.43 19.75 68.80
qs_1_scaffold_7250 3 3214 bp 59.77 23.34 68.70
qs_1_scaffold_2359 5 6678 bp 53.56 21.77 68.64
qs_1_scaffold_632 15 14983 bp 55.78 20.90 68.52
qs_1_scaffold_200 41 37045 bp 54.41 21.47 68.45
qs_1_scaffold_15354 3 3197 bp 53.64 18.30 68.41
qs_1_scaffold_3295
Domain: Viridiplantae (50%)
8 5428 bp 57.37 21.11 68.31
qs_1_scaffold_3447 4 5269 bp 56.29 19.37 68.27
qs_1_scaffold_872 18 12578 bp 54.98 21.22 68.21
qs_1_scaffold_1198 13 11755 bp 53.60 23.48 68.14
qs_1_scaffold_1633 19 25945 bp 54.81 21.71 68.07
qs_1_scaffold_9897 4 3946 bp 55.60 16.79 68.04
qs_1_scaffold_3618 6 7051 bp 52.94 20.62 68.03
qs_1_scaffold_592 44 39120 bp 54.40 21.45 68.03
qs_1_scaffold_871 39 42345 bp 55.49 21.18 67.93
qs_1_scaffold_17069
Species: Tetranychus urticae (50%)
2 2504 bp 69.01 53.59 67.93
qs_1_scaffold_722
Domain: Viridiplantae (50%)
20 26433 bp 56.96 20.48 67.88
qs_1_scaffold_7049 3 3278 bp 51.65 19.01 67.82
qs_1_scaffold_4172 7 4631 bp 54.20 18.85 67.76
qs_1_scaffold_11270 5 5304 bp 52.90 42.46 67.76
qs_1_scaffold_6950 4 4375 bp 54.31 20.94 67.68
qs_1_scaffold_8136 6 2961 bp 56.70 18.98 67.68
qs_1_scaffold_1252 15 14645 bp 55.05 21.66 67.62
qs_1_scaffold_1181 30 31752 bp 52.57 22.41 67.55
qs_1_scaffold_4353 10 10707 bp 55.37 20.90 67.53
qs_1_scaffold_15638
Species: Mixia osmundae (100%)
1 1827 bp 52.93 21.24 67.49
qs_1_scaffold_866 19 19267 bp 54.73 20.26 67.45
qs_1_scaffold_1034 21 20028 bp 54.35 20.99 67.35
qs_1_scaffold_500 20 17069 bp 51.73 19.14 67.27
qs_1_scaffold_12570
Species: Auxenochlorella protothecoides (50%)
2 3107 bp 55.07 17.06 67.20
qs_1_scaffold_24324
Species: Thalassiosira pseudonana (50%)
2 1274 bp 51.02 10.60 67.11
qs_1_scaffold_1655 11 13670 bp 56.94 21.42 67.11
qs_1_scaffold_1356 8 10938 bp 54.92 22.04 67.06
qs_1_scaffold_1314 15 14323 bp 55.33 20.53 67.03
qs_1_scaffold_2507 6 6423 bp 55.46 22.11 67.02
qs_1_scaffold_6503 5 4867 bp 52.54 22.07 67.00
qs_1_scaffold_6992 5 3938 bp 53.86 21.71 66.73
qs_1_scaffold_863 19 13605 bp 51.29 21.60 66.73
Displaying items 651-700 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.