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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 1-50 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_275 86 84869 bp 56.12 21.38 77.03
qs_1_scaffold_4 77 80918 bp 55.70 21.34 79.86
qs_1_scaffold_81 69 68826 bp 55.80 20.71 77.79
qs_1_scaffold_208 66 58154 bp 57.22 21.27 80.33
qs_1_scaffold_87 61 58011 bp 57.26 20.90 77.84
qs_1_scaffold_462 60 46057 bp 55.67 21.97 80.70
qs_1_scaffold_285 56 56354 bp 56.57 21.26 79.91
qs_1_scaffold_96 56 52576 bp 55.87 21.15 81.93
qs_1_scaffold_47 55 53821 bp 56.47 20.47 78.08
qs_1_scaffold_50 54 43795 bp 55.61 21.72 72.83
qs_1_scaffold_77 54 46918 bp 56.97 21.68 76.58
qs_1_scaffold_51 52 54396 bp 54.98 23.58 79.02
qs_1_scaffold_206 52 54044 bp 54.90 20.50 75.99
qs_1_scaffold_154 51 65584 bp 53.90 21.04 84.32
qs_1_scaffold_1113 48 38724 bp 55.68 20.25 78.51
qs_1_scaffold_183 48 42084 bp 55.74 21.23 82.51
qs_1_scaffold_1283 46 34324 bp 57.20 33.24 69.98
qs_1_scaffold_184 45 44733 bp 54.72 20.73 83.46
qs_1_scaffold_592 44 39120 bp 54.40 21.45 68.03
qs_1_scaffold_80 44 38214 bp 55.55 20.86 77.14
qs_1_scaffold_256 42 53322 bp 55.92 20.78 75.46
qs_1_scaffold_660 41 48035 bp 56.29 20.22 74.99
qs_1_scaffold_200 41 37045 bp 54.41 21.47 68.45
qs_1_scaffold_1702 41 31094 bp 61.27 19.03 86.25
qs_1_scaffold_521 41 38534 bp 56.01 20.94 73.43
qs_1_scaffold_293 41 31717 bp 54.92 21.31 76.17
qs_1_scaffold_100 41 39015 bp 55.07 20.85 71.63
qs_1_scaffold_257 40 35021 bp 55.05 21.49 78.58
qs_1_scaffold_223 40 32026 bp 55.65 21.77 83.73
qs_1_scaffold_871 39 42345 bp 55.49 21.18 67.93
qs_1_scaffold_106 39 42629 bp 55.34 21.64 71.97
qs_1_scaffold_847 38 34361 bp 55.34 22.09 72.65
qs_1_scaffold_1147 38 28681 bp 56.68 19.78 70.82
qs_1_scaffold_331 38 35735 bp 56.03 20.81 69.59
qs_1_scaffold_59 36 41823 bp 54.23 21.27 65.46
qs_1_scaffold_279 36 40481 bp 55.52 21.32 77.15
qs_1_scaffold_158 35 47238 bp 55.50 20.94 77.80
qs_1_scaffold_317 35 39241 bp 55.47 21.63 73.80
qs_1_scaffold_708 35 31146 bp 52.26 23.13 60.87
qs_1_scaffold_117 35 32849 bp 56.40 20.92 79.67
qs_1_scaffold_430 35 33204 bp 54.97 22.38 75.35
qs_1_scaffold_122 35 31854 bp 56.14 21.33 77.62
qs_1_scaffold_260
Domain: Viridiplantae (58.82%)
34 47375 bp 55.94 20.82 74.13
qs_1_scaffold_598 34 34397 bp 54.44 20.65 78.78
qs_1_scaffold_219 34 28142 bp 55.41 20.66 75.19
qs_1_scaffold_97
Domain: Viridiplantae (58.82%)
34 40329 bp 56.56 20.43 71.70
qs_1_scaffold_436 34 25584 bp 54.49 21.49 79.12
qs_1_scaffold_704 33 33768 bp 53.53 22.48 74.63
qs_1_scaffold_250 33 38023 bp 55.51 21.02 75.48
qs_1_scaffold_306 33 25855 bp 54.74 20.94 83.35
Displaying items 1-50 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.