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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 151-200 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_263 21 28310 bp 55.81 20.43 77.72
qs_1_scaffold_789 21 22944 bp 52.60 22.66 62.35
qs_1_scaffold_543 21 28298 bp 54.89 21.20 75.08
qs_1_scaffold_493 21 17167 bp 55.62 19.99 73.47
qs_1_scaffold_268 21 23201 bp 56.28 21.08 91.34
qs_1_scaffold_1091
Domain: Viridiplantae (52.38%)
21 24289 bp 56.13 20.61 82.27
qs_1_scaffold_2641 20 15326 bp 54.52 21.13 78.04
qs_1_scaffold_500 20 17069 bp 51.73 19.14 67.27
qs_1_scaffold_313 20 21452 bp 56.63 21.31 83.42
qs_1_scaffold_918 20 23050 bp 55.19 21.73 85.80
qs_1_scaffold_539 20 17428 bp 55.19 21.56 63.79
qs_1_scaffold_302 20 21933 bp 53.73 21.94 76.49
qs_1_scaffold_286 20 26725 bp 54.78 21.51 72.99
qs_1_scaffold_900
Domain: Viridiplantae (50%)
20 17562 bp 56.09 20.97 82.83
qs_1_scaffold_722
Domain: Viridiplantae (50%)
20 26433 bp 56.96 20.48 67.88
qs_1_scaffold_1689
Domain: Viridiplantae (50%)
20 18999 bp 55.03 20.67 76.57
qs_1_scaffold_388 20 32986 bp 54.38 21.72 78.57
qs_1_scaffold_866 19 19267 bp 54.73 20.26 67.45
qs_1_scaffold_910 19 19130 bp 54.29 21.86 76.26
qs_1_scaffold_822 19 12963 bp 62.05 22.43 82.78
qs_1_scaffold_1305 19 20733 bp 61.76 20.32 85.31
qs_1_scaffold_959 19 15704 bp 55.53 21.45 80.96
qs_1_scaffold_1631 19 13397 bp 53.48 20.31 68.80
qs_1_scaffold_1633 19 25945 bp 54.81 21.71 68.07
qs_1_scaffold_1175 19 24175 bp 53.91 21.37 80.60
qs_1_scaffold_1478 19 17603 bp 55.89 20.27 72.75
qs_1_scaffold_343
Domain: Viridiplantae (52.63%)
19 20769 bp 55.83 20.40 77.28
qs_1_scaffold_231 19 24489 bp 57.20 21.06 76.74
qs_1_scaffold_676 19 20408 bp 54.49 22.30 72.05
qs_1_scaffold_464
Domain: Viridiplantae (52.63%)
19 22815 bp 55.93 20.57 75.44
qs_1_scaffold_863 19 13605 bp 51.29 21.60 66.73
qs_1_scaffold_530 19 17073 bp 55.74 21.44 83.55
qs_1_scaffold_2519 19 14906 bp 55.13 24.07 69.48
qs_1_scaffold_413 18 21614 bp 54.58 20.57 61.64
qs_1_scaffold_751 18 24238 bp 57.49 20.01 74.12
qs_1_scaffold_2273 18 12013 bp 54.61 19.61 63.26
qs_1_scaffold_872 18 12578 bp 54.98 21.22 68.21
qs_1_scaffold_666 18 14977 bp 55.06 20.56 74.07
qs_1_scaffold_643 18 15235 bp 54.19 22.26 65.73
qs_1_scaffold_1057 18 21886 bp 54.90 21.19 84.21
qs_1_scaffold_576 18 16867 bp 54.84 20.61 82.31
qs_1_scaffold_714 18 16109 bp 52.91 20.24 63.04
qs_1_scaffold_1037 18 22047 bp 56.51 20.67 83.03
qs_1_scaffold_459 18 17780 bp 53.92 21.07 68.94
qs_1_scaffold_765 18 13503 bp 56.67 20.56 71.27
qs_1_scaffold_1299 18 17080 bp 55.05 21.71 80.41
qs_1_scaffold_951 18 22231 bp 55.94 21.54 66.70
qs_1_scaffold_587 18 15611 bp 54.12 20.97 79.19
qs_1_scaffold_213 18 33605 bp 53.96 22.60 80.23
qs_1_scaffold_1370
Domain: Viridiplantae (50%)
18 21058 bp 56.58 21.49 79.47
Displaying items 151-200 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.