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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 201-250 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_280 17 23910 bp 53.92 23.11 64.15
qs_1_scaffold_4667 17 8449 bp 64.46 21.02 86.78
qs_1_scaffold_909 17 23715 bp 54.64 23.49 62.32
qs_1_scaffold_1582 17 12977 bp 60.82 20.24 83.59
qs_1_scaffold_4149 17 11810 bp 53.97 20.69 77.07
qs_1_scaffold_1032 17 20431 bp 55.58 21.44 80.17
qs_1_scaffold_3311 17 14694 bp 61.39 19.93 82.22
qs_1_scaffold_853
Domain: Viridiplantae (52.94%)
17 24101 bp 55.09 21.64 73.10
qs_1_scaffold_1613 17 17688 bp 57.16 19.91 76.85
qs_1_scaffold_716 17 13994 bp 56.16 20.61 72.20
qs_1_scaffold_421 17 18790 bp 54.44 22.86 82.42
qs_1_scaffold_1342 17 20001 bp 53.58 20.27 73.80
qs_1_scaffold_584 17 15667 bp 55.59 20.37 75.73
qs_1_scaffold_1873 17 11554 bp 53.76 21.46 79.56
qs_1_scaffold_1989 17 17354 bp 63.32 20.66 88.20
qs_1_scaffold_1552 17 16658 bp 56.18 20.98 72.61
qs_1_scaffold_724 17 21443 bp 55.48 20.76 84.03
qs_1_scaffold_252 17 29549 bp 54.56 20.20 65.21
qs_1_scaffold_1255 17 15767 bp 54.34 23.91 76.58
qs_1_scaffold_425
Domain: Viridiplantae (56.25%)
16 18698 bp 54.74 20.93 84.91
qs_1_scaffold_1118 16 10798 bp 54.57 20.63 60.21
qs_1_scaffold_518 16 24677 bp 54.61 20.44 90.44
qs_1_scaffold_2206 16 14256 bp 55.26 21.89 74.50
qs_1_scaffold_1961 16 10491 bp 52.52 23.34 72.78
qs_1_scaffold_2030 16 9088 bp 61.59 20.05 75.03
qs_1_scaffold_1549 16 16159 bp 54.08 21.19 69.16
qs_1_scaffold_860 16 12688 bp 54.92 22.20 77.01
qs_1_scaffold_585 16 15638 bp 53.84 20.99 82.24
qs_1_scaffold_974 16 18196 bp 56.86 20.39 88.39
qs_1_scaffold_1966 16 18902 bp 54.73 21.71 75.66
qs_1_scaffold_838 16 12818 bp 55.18 21.44 73.37
qs_1_scaffold_749 16 14186 bp 54.85 24.73 83.28
qs_1_scaffold_2891 16 18650 bp 58.92 21.80 88.05
qs_1_scaffold_1072 15 11058 bp 54.70 22.20 70.67
qs_1_scaffold_5318 15 9927 bp 40.10 202.46 54.68
qs_1_scaffold_932 15 12102 bp 52.90 21.05 73.90
qs_1_scaffold_1260 15 10087 bp 54.61 21.95 81.82
qs_1_scaffold_935 15 13789 bp 57.50 20.20 71.91
qs_1_scaffold_486 15 17287 bp 56.33 20.85 88.12
qs_1_scaffold_734 15 16189 bp 55.51 22.38 82.32
qs_1_scaffold_642 15 19958 bp 54.81 21.69 70.84
qs_1_scaffold_4291 15 10226 bp 59.28 18.33 73.75
qs_1_scaffold_382 15 19433 bp 55.09 21.32 72.87
qs_1_scaffold_874 15 12565 bp 53.63 20.19 72.70
qs_1_scaffold_1173 15 15772 bp 55.51 21.46 64.52
qs_1_scaffold_2233 15 12779 bp 54.78 22.23 72.28
qs_1_scaffold_1498 15 9037 bp 56.68 19.04 75.02
qs_1_scaffold_785
Domain: Viridiplantae (53.33%)
15 13343 bp 54.82 20.50 70.82
qs_1_scaffold_1314 15 14323 bp 55.33 20.53 67.03
qs_1_scaffold_432 15 18451 bp 53.88 21.63 74.60
Displaying items 201-250 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.