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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 651-700 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_3371 6 5351 bp 56.36 19.87 64.03
qs_1_scaffold_1101 8 10891 bp 55.63 19.87 83.13
qs_1_scaffold_5258 11 9506 bp 61.24 19.86 82.94
qs_1_scaffold_2991 9 10727 bp 55.09 19.85 78.03
qs_1_scaffold_2485
Phylum: Chlorophyta (66.67%)
3 6452 bp 60.14 19.85 78.16
qs_1_scaffold_1160 30 18476 bp 56.22 19.85 82.49
qs_1_scaffold_7012 4 3290 bp 49.42 19.85 57.08
qs_1_scaffold_204
Phylum: Chlorophyta (50%)
24 26224 bp 61.26 19.83 87.23
qs_1_scaffold_2089 7 7263 bp 55.68 19.81 81.87
qs_1_scaffold_6313 3 3538 bp 52.43 19.79 54.18
qs_1_scaffold_4794
Domain: Viridiplantae (60%)
5 6488 bp 63.90 19.79 90.40
qs_1_scaffold_4263 9 4565 bp 52.66 19.78 64.40
qs_1_scaffold_1147 38 28681 bp 56.68 19.78 70.82
qs_1_scaffold_6905
Species: Ostreococcus 'lucimarinus' (50%)
2 3326 bp 56.83 19.78 82.44
qs_1_scaffold_1367 12 12398 bp 56.13 19.77 73.12
qs_1_scaffold_5219 5 4009 bp 54.73 19.76 90.55
qs_1_scaffold_2880 10 9101 bp 53.59 19.75 65.99
qs_1_scaffold_11983
Phylum: Chlorophyta (50%)
4 4147 bp 56.43 19.75 68.80
qs_1_scaffold_7216
Species: Monoraphidium neglectum (50%)
2 3221 bp 55.29 19.75 66.31
qs_1_scaffold_2453
Domain: Viridiplantae (50%)
6 7174 bp 54.86 19.74 79.58
qs_1_scaffold_1336 14 13481 bp 51.82 19.73 61.29
qs_1_scaffold_3654
Domain: Viridiplantae (58.33%)
12 13809 bp 55.03 19.73 64.15
qs_1_scaffold_10526 4 3433 bp 54.97 19.72 84.68
qs_1_scaffold_15547
Species: Tetraselmis sp. GSL018 (66.67%)
3 1836 bp 57.30 19.72 92.48
qs_1_scaffold_4761
Species: Coccomyxa subellipsoidea (66.67%)
6 10946 bp 60.22 19.71 82.88
qs_1_scaffold_6587 6 5132 bp 50.35 19.70 52.44
qs_1_scaffold_13112
Species: Citrus clementina (50%)
2 2098 bp 56.24 19.69 87.80
qs_1_scaffold_6409 7 8060 bp 56.43 19.65 92.98
qs_1_scaffold_2815 10 8993 bp 54.99 19.65 71.32
qs_1_scaffold_1352 10 9682 bp 55.83 19.63 80.10
qs_1_scaffold_2273 18 12013 bp 54.61 19.61 63.26
qs_1_scaffold_20907
Species: Micromonas pusilla (100%)
1 1444 bp 55.06 19.60 99.93
qs_1_scaffold_4034 5 4754 bp 57.03 19.58 74.72
qs_1_scaffold_925 13 13248 bp 55.66 19.58 83.45
qs_1_scaffold_4300 13 9368 bp 54.33 19.57 70.14
qs_1_scaffold_4816 5 4679 bp 54.50 19.56 69.18
qs_1_scaffold_5117 7 4064 bp 61.12 19.56 87.25
qs_1_scaffold_1474 11 12675 bp 56.11 19.55 76.09
qs_1_scaffold_4256 4 5289 bp 55.10 19.51 71.02
qs_1_scaffold_1532 12 8891 bp 56.60 19.50 75.72
qs_1_scaffold_8339
Domain: Viridiplantae (60%)
5 5262 bp 56.18 19.50 78.51
qs_1_scaffold_1201 21 24452 bp 57.57 19.49 85.43
qs_1_scaffold_5577
Species: Micromonas sp. RCC299 (100%)
1 3848 bp 55.12 19.46 60.89
qs_1_scaffold_10756 4 3286 bp 53.90 19.45 74.50
qs_1_scaffold_6777 3 3367 bp 55.95 19.45 89.46
qs_1_scaffold_1761 11 9141 bp 62.24 19.42 92.91
qs_1_scaffold_2791 9 10090 bp 56.54 19.41 79.62
qs_1_scaffold_14308
Species: Micromonas sp. RCC299 (50%)
2 1960 bp 61.68 19.39 94.29
qs_1_scaffold_3259 5 5452 bp 55.80 19.39 77.20
qs_1_scaffold_3447 4 5269 bp 56.29 19.37 68.27
Displaying items 651-700 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.