ggKbase home page
Advanced Search
Search Help

QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 151-200 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_3595
Domain: Viridiplantae (50%)
6 6441 bp 53.98 20.43 64.32
qs_1_scaffold_4263 9 4565 bp 52.66 19.78 64.40
qs_1_scaffold_5686 6 3803 bp 54.33 12.49 64.45
qs_1_scaffold_1173 15 15772 bp 55.51 21.46 64.52
qs_1_scaffold_10816 5 3690 bp 55.15 21.41 64.63
qs_1_scaffold_2406 9 7957 bp 53.21 22.74 64.69
qs_1_scaffold_17255
Species: Auxenochlorella protothecoides (50%)
2 1688 bp 53.73 21.98 64.69
qs_1_scaffold_8924
Order: Mamiellales (50%)
4 2780 bp 54.60 18.20 64.86
qs_1_scaffold_729 23 20923 bp 53.76 21.34 64.91
qs_1_scaffold_6141 5 3607 bp 54.28 17.24 64.96
qs_1_scaffold_3619 5 6895 bp 56.49 20.55 65.05
qs_1_scaffold_637 22 22811 bp 56.90 17.39 65.11
qs_1_scaffold_6308 3 4624 bp 53.83 18.00 65.20
qs_1_scaffold_252 17 29549 bp 54.56 20.20 65.21
qs_1_scaffold_2749 11 13193 bp 54.46 23.38 65.22
qs_1_scaffold_14193
Species: Ostreococcus tauri (50%)
2 1973 bp 55.65 18.40 65.23
qs_1_scaffold_4072
Phylum: Chlorophyta (50%)
4 4721 bp 51.87 22.45 65.26
qs_1_scaffold_1051 21 20406 bp 54.87 20.76 65.39
qs_1_scaffold_59 36 41823 bp 54.23 21.27 65.46
qs_1_scaffold_3237 14 10613 bp 53.93 18.95 65.50
qs_1_scaffold_1923 8 8395 bp 53.87 21.36 65.54
qs_1_scaffold_28790
Species: Pararge aegeria (50%)
2 1103 bp 60.47 6.62 65.55
qs_1_scaffold_976 11 11645 bp 56.01 20.24 65.59
qs_1_scaffold_643 18 15235 bp 54.19 22.26 65.73
qs_1_scaffold_29696
Species: Toxoplasma gondii (50%)
2 1725 bp 63.25 7.48 65.74
qs_1_scaffold_1518 5 8928 bp 53.07 21.28 65.76
qs_1_scaffold_3649 9 9704 bp 53.68 20.07 65.79
qs_1_scaffold_1656 7 9017 bp 54.75 21.03 65.88
qs_1_scaffold_1431 26 20740 bp 54.16 22.03 65.89
qs_1_scaffold_2880 10 9101 bp 53.59 19.75 65.99
qs_1_scaffold_829 14 13819 bp 53.90 20.38 66.00
qs_1_scaffold_3174 7 5542 bp 55.47 21.04 66.04
qs_1_scaffold_1771 9 8008 bp 54.62 20.84 66.08
qs_1_scaffold_23098
Species: Caenorhabditis brenneri (50%)
2 1329 bp 64.94 47.78 66.14
qs_1_scaffold_915 25 22475 bp 52.78 22.09 66.15
qs_1_scaffold_771 22 21113 bp 55.67 20.15 66.16
qs_1_scaffold_1856
Domain: Viridiplantae (50%)
6 10691 bp 53.98 18.80 66.17
qs_1_scaffold_7216
Species: Monoraphidium neglectum (50%)
2 3221 bp 55.29 19.75 66.31
qs_1_scaffold_1094 12 10947 bp 56.09 21.70 66.32
qs_1_scaffold_2593 10 7457 bp 52.55 21.87 66.38
qs_1_scaffold_2486
Phylum: Chlorophyta (100%)
3 6443 bp 54.71 21.96 66.40
qs_1_scaffold_12975
Species: Ostreococcus tauri (100%)
1 2116 bp 56.29 21.27 66.49
qs_1_scaffold_7339
Domain: Viridiplantae (50%)
4 3637 bp 64.20 18.28 66.57
qs_1_scaffold_870
Domain: Viridiplantae (50%)
26 35670 bp 53.34 20.93 66.59
qs_1_scaffold_7000
Domain: Viridiplantae (66.67%)
3 3292 bp 51.79 20.17 66.62
qs_1_scaffold_951 18 22231 bp 55.94 21.54 66.70
qs_1_scaffold_863 19 13605 bp 51.29 21.60 66.73
qs_1_scaffold_6992 5 3938 bp 53.86 21.71 66.73
qs_1_scaffold_6503 5 4867 bp 52.54 22.07 67.00
qs_1_scaffold_2507 6 6423 bp 55.46 22.11 67.02
Displaying items 151-200 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.