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QS_1_Euk_56_21

QS_1_unknown_55_22
In projects: QS_1

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_1_UNK

Properties

Avg. coverage: 21.81 Longest contig: 84.87 Kbp Bin length: 10.86 Mbp GC content: 55.46 %
Contigs count: 895 Features count: 10685 rRNAs count: 2 tRNAs count: 29

Genome completeness

megabin RP 45 / 55 MC: 34 BSCG 41 / 51 MC: 19 ASCG 27 / 38 MC: 10
Displaying items 301-350 of 896 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_1_scaffold_935 15 13789 bp 57.50 20.20 71.91
qs_1_scaffold_1090 10 10953 bp 54.22 20.20 70.34
qs_1_scaffold_252 17 29549 bp 54.56 20.20 65.21
qs_1_scaffold_2156 5 7717 bp 54.43 20.21 88.71
qs_1_scaffold_3016 6 5705 bp 57.00 20.21 59.26
qs_1_scaffold_5579 8 7160 bp 53.97 20.21 72.32
qs_1_scaffold_1640 11 8465 bp 55.05 20.21 69.85
qs_1_scaffold_660 41 48035 bp 56.29 20.22 74.99
qs_1_scaffold_1073 22 19131 bp 57.01 20.23 74.09
qs_1_scaffold_2667
Species: Micromonas sp. RCC299 (50%)
4 6153 bp 58.80 20.23 95.86
qs_1_scaffold_3119
Domain: Viridiplantae (71.43%)
7 9816 bp 56.58 20.23 80.72
qs_1_scaffold_1582 17 12977 bp 60.82 20.24 83.59
qs_1_scaffold_846 13 12772 bp 54.81 20.24 78.86
qs_1_scaffold_714 18 16109 bp 52.91 20.24 63.04
qs_1_scaffold_976 11 11645 bp 56.01 20.24 65.59
qs_1_scaffold_1113 48 38724 bp 55.68 20.25 78.51
qs_1_scaffold_866 19 19267 bp 54.73 20.26 67.45
qs_1_scaffold_1003 12 11512 bp 56.81 20.27 79.82
qs_1_scaffold_1478 19 17603 bp 55.89 20.27 72.75
qs_1_scaffold_1342 17 20001 bp 53.58 20.27 73.80
qs_1_scaffold_1060 14 11665 bp 56.46 20.28 71.52
qs_1_scaffold_1930 8 7615 bp 54.80 20.29 61.65
qs_1_scaffold_1242
Domain: Viridiplantae (50%)
10 10171 bp 64.32 20.29 92.62
qs_1_scaffold_858 23 20920 bp 54.98 20.29 80.68
qs_1_scaffold_1484 13 14279 bp 55.90 20.29 81.94
qs_1_scaffold_571 13 19967 bp 55.08 20.31 75.24
qs_1_scaffold_912 22 22910 bp 55.74 20.31 72.24
qs_1_scaffold_1631 19 13397 bp 53.48 20.31 68.80
qs_1_scaffold_1305 19 20733 bp 61.76 20.32 85.31
qs_1_scaffold_3926 8 5413 bp 53.22 20.32 57.97
qs_1_scaffold_1664 23 17282 bp 54.43 20.32 69.38
qs_1_scaffold_738 12 15441 bp 56.48 20.33 86.42
qs_1_scaffold_7864
Class: rosids (50%)
4 5420 bp 55.41 20.33 50.42
qs_1_scaffold_3592
Order: Mamiellales (50%)
4 6673 bp 53.17 20.34 58.13
qs_1_scaffold_7871
Species: Tetraselmis sp. GSL018 (100%)
1 3034 bp 53.30 20.34 69.71
qs_1_scaffold_9733
Phylum: Chlorophyta (66.67%)
3 2610 bp 53.60 20.34 81.84
qs_1_scaffold_1763 6 8030 bp 56.81 20.35 75.73
qs_1_scaffold_618 12 15186 bp 57.92 20.35 79.45
qs_1_scaffold_7573 8 7114 bp 56.52 20.35 68.82
qs_1_scaffold_579 26 26555 bp 53.90 20.35 73.95
qs_1_scaffold_3138 6 6860 bp 55.82 20.35 61.44
qs_1_scaffold_1647
Domain: Viridiplantae (58.33%)
12 16603 bp 56.12 20.36 75.71
qs_1_scaffold_3514
Phylum: Streptophyta (50%)
4 6170 bp 63.35 20.36 80.91
qs_1_scaffold_1914 8 10703 bp 56.36 20.37 81.17
qs_1_scaffold_584 17 15667 bp 55.59 20.37 75.73
qs_1_scaffold_6776
Species: Volvox carteri (50%)
2 3368 bp 55.52 20.37 70.37
qs_1_scaffold_829 14 13819 bp 53.90 20.38 66.00
qs_1_scaffold_424
Domain: Viridiplantae (53.33%)
15 18721 bp 57.89 20.38 78.01
qs_1_scaffold_974 16 18196 bp 56.86 20.39 88.39
qs_1_scaffold_2228 7 8024 bp 61.74 20.40 71.04
Displaying items 301-350 of 896 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.