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qs_1_scaffold_1828

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_1_scaffold_1828_1
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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1..3987
DNA (3987bp) protein (1329aa)
DNA topoisomerase VI subunit B (EC:5.99.1.3)
DNA topoisomerase VI subunit B {ECO:0000313|EMBL:CCQ32295.1}; EC=5.99.1.3 {ECO:0000313|EMBL:CCQ32295.1};; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae
DNA topoisomerase VI subunit B n=2 Tax=Halorhabdus tiamatea SARL4B RepID=S6D1B4_9EURY
qs_1_scaffold_1828_2
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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4005..5117
DNA (1113bp) protein (371aa)
Type 2 DNA topoisomerase 6 subunit A {ECO:0000256|HAMAP-Rule:MF_00132}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00132};; Type II DNA topoisomerase VI subunit A {ECO:0000256|HAMAP-Rule:MF_00132}; TaxID=
Type 2 DNA topoisomerase 6 subunit A n=1 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JIS6_NATP1
DNA topoisomerase VI, subunit A
qs_1_scaffold_1828_3
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5126..5662)
DNA (537bp) protein (179aa)
Pre-rRNA processing n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PMX0_9EURY
hypothetical protein
Pre-rRNA processing {ECO:0000313|EMBL:ERJ07677.1}; Uncharacterized protein {ECO:0000313|EMBL:CCQ32666.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae
qs_1_scaffold_1828_4
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5662..6606)
DNA (945bp) protein (315aa)
tRNA and rRNA cytosine-C5-methylase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CR15_9EURY
tRNA and rRNA cytosine-C5-methylase {ECO:0000313|EMBL:ELZ25058.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex car
RNA methylase
qs_1_scaffold_1828_5
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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6953..7468
DNA (516bp) protein (172aa)
beta-1,4-xylanase, family GH10 (EC:3.2.1.8)
Uncharacterized protein n=1 Tax=halophilic archaeon J07HX64 RepID=U1PE89_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ERH08369.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
qs_1_scaffold_1828_6
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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7582..8328
DNA (747bp) protein (249aa)
Putative transcriptional regulator n=1 Tax=halophilic archaeon J07HX64 RepID=U1QQY7_9EURY
Putative transcriptional regulator {ECO:0000313|EMBL:ERH09578.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
MarR family transcriptional regulator
qs_1_scaffold_1828_7
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(8353..8856)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=halophilic archaeon J07HX5 RepID=U1P619_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ERG88992.1}; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX5.;"
hypothetical protein
qs_1_scaffold_1828_8
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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9178..9531
DNA (354bp) protein (118aa)
DNA-binding protein J07HX64_02569 n=1 Tax=halophilic archaeon J07HX64 RepID=U1P297_9EURY
DNA-binding protein J07HX64_02569 {ECO:0000256|HAMAP-Rule:MF_00026}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
hypothetical protein
qs_1_scaffold_1828_9
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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9531..10121
DNA (591bp) protein (197aa)
hypothetical protein; K07585 hypothetical protein id=24655508 bin=uncultured_archaeon_J07HX5 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultured_archaeon_J07HX5
Putative PP-loop ATPase {ECO:0000313|EMBL:ERG88966.1}; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX5.;"
putative subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
qs_1_scaffold_1828_10
Halovivax asiaticus, Halovivax, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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10417..12072
DNA (1656bp) protein (552aa)
Acyl-CoA synthetase n=1 Tax=Halovivax asiaticus JCM 14624 RepID=M0BBM9_9EURY
Acyl-CoA synthetase {ECO:0000313|EMBL:ELZ08326.1}; TaxID=1227490 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halovivax.;" source="Halovivax asiaticus JCM 14624.;"
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
qs_1_scaffold_1828_11
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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12259..12555
DNA (297bp) protein (99aa)
AbrB family transcription regulator n=1 Tax=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) RepID=Q18EF2_HALWD
abrB; transcription regulator
Probable VapB/AbrB family antitoxin {ECO:0000313|EMBL:CAJ53677.1}; TaxID=362976 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum wal
qs_1_scaffold_1828_12
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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12552..12698
DNA (147bp) protein (49aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Putative toxin VapC {ECO:0000256|HAMAP-Rule:MF_
Ribonuclease VapC n=1 Tax=haloarchaeon 3A1_DGR RepID=T0U1J2_9EURY
hypothetical protein
qs_1_scaffold_1828_13
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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12756..13100
DNA (345bp) protein (115aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Putative toxin VapC {ECO:0000256|HAMAP-Rule:MF_
Ribonuclease VapC n=1 Tax=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) RepID=Q18EF3_HALWD
hypothetical protein
qs_1_scaffold_1828_14
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(13235..14191)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0IWE2_HALVA
Uncharacterized protein {ECO:0000313|EMBL:EMA01026.1}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula vallismortis ATCC
hypothetical protein
Displaying 14 items

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