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qs_1_scaffold_6420

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_1_scaffold_6420_1
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2..658
DNA (657bp) protein (219aa)
30S ribosomal protein S3 n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PKT0_9EURY
30S ribosomal protein S3e (S3p)
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea
qs_1_scaffold_6420_2
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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655..891
DNA (237bp) protein (79aa)
50S ribosomal protein L29P n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W8X8_9EURY
50S ribosomal protein L29P
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp. Harch
qs_1_scaffold_6420_3
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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892..1179
DNA (288bp) protein (96aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
ribonuclease P n=1 Tax=Halomicrobium katesii RepID=UPI00037B98D9
ribonuclease P, Rpp29
qs_1_scaffold_6420_4
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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1170..1568
DNA (399bp) protein (133aa)
30S ribosomal protein S17P n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LFH1_9EURY
30S ribosomal protein S17P {ECO:0000313|EMBL:EMA32301.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.;"
ribosomal protein S17P
qs_1_scaffold_6420_5
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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1568..1966
DNA (399bp) protein (133aa)
50S ribosomal protein L14 n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CMN3_9EURY
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbade
rpl14; 50S ribosomal protein L14
qs_1_scaffold_6420_6
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2032..2325
DNA (294bp) protein (98aa)
50S ribosomal protein L24P n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MFI8_9EURY
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharol
rpl24p; 50S ribosomal protein L24
qs_1_scaffold_6420_7
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2318..3085
DNA (768bp) protein (256aa)
30S ribosomal protein S4e n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CL88_9EURY
rps4e; 30S ribosomal protein S4e
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbade
qs_1_scaffold_6420_8
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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3082..3705
DNA (624bp) protein (208aa)
50S ribosomal protein L5 n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0MMW8_9EURY
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma nitratireducens
50S ribosomal protein L5
qs_1_scaffold_6420_9
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3702..4094
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P4D5_HALMD
rps8p; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukoha
qs_1_scaffold_6420_10
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4097..4669
DNA (573bp) protein (191aa)
50S ribosomal protein L6 n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=RL6_HALMA
rpl6p; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DS
qs_1_scaffold_6420_11
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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4669..5688
DNA (1020bp) protein (340aa)
50S ribosomal protein L32e n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W8Y2_9EURY
50S ribosomal protein L32e
50S ribosomal protein L32e {ECO:0000313|EMBL:AGN02183.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp. Harcht-Bs
qs_1_scaffold_6420_12
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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5685..6131
DNA (447bp) protein (149aa)
50S ribosomal protein L19e n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0K8G9_9EURY
rpl19e; 50S ribosomal protein L19
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula amylolyti
qs_1_scaffold_6420_13
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


6131..6691
DNA (561bp) protein (187aa)
50S ribosomal protein L18P n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=RL18_HALMA
rpl18p; 50S ribosomal protein L18
50S ribosomal protein L18; Hl12; Hmal18; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortui (strain ATCC 43049
qs_1_scaffold_6420_14
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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6688..7332
DNA (645bp) protein (215aa)
SSU ribosomal protein S5P n=1 Tax=halophilic archaeon J07HX64 RepID=U1PKL8_9EURY
SSU ribosomal protein S5P {ECO:0000313|EMBL:ERH10991.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
rps5p; 30S ribosomal protein S5P
qs_1_scaffold_6420_15
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


7772..8149
DNA (378bp) protein (126aa)
50S ribosomal protein L15P n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PKR4_9EURY
50S ribosomal protein L27Ae (L15p)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea
qs_1_scaffold_6420_16
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8151..9617
DNA (1467bp) protein (489aa)
Protein translocase subunit SecY n=1 Tax=halophilic archaeon J07HX64 RepID=U1PLJ6_9EURY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; Protein transport protein SEC61 subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=108502
secY; preprotein translocase subunit SecY (TC 3.A.5.1.1)
Displaying 16 items

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