ggKbase home page

qs_1_scaffold_2376

Search features with annotation key words

Displaying items 1-30 of 34 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_1_scaffold_2376_1
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3..350
DNA (348bp) protein (116aa)
Zinc finger SWIM domain-containing protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LXD9_9EURY
Zinc finger SWIM domain-containing protein {ECO:0000313|EMBL:EMA38111.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococc
hypothetical protein
qs_1_scaffold_2376_2
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

949..2532
DNA (1584bp) protein (528aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LTL5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA35744.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
hypothetical protein
qs_1_scaffold_2376_3
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2543..2932)
DNA (390bp) protein (130aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Putative toxin VapC {ECO:0000256|HAMAP-Rule:MF_
Ribonuclease VapC n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N212_9EURY
putative nucleic acid-binding protein, contains PIN domain
qs_1_scaffold_2376_4
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2929..3273)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D034_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ28830.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
qs_1_scaffold_2376_5

Not on your lists

comp(3393..4289)
DNA (897bp) protein (299aa)
uvsE; UV damage endonuclease (EC:3.-.-.-)
UV-damage endonuclease n=1 Tax=uncultured archaeon A07HN63 RepID=V4Y6V2_9ARCH
UV-damage endonuclease {ECO:0000313|EMBL:ESS08491.1}; TaxID=1412873 species="Archaea; environmental samples.;" source="uncultured archaeon A07HN63.;"
qs_1_scaffold_2376_6
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4566..5315
DNA (750bp) protein (250aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {
psmA; proteasome alpha subunit (EC:3.4.25.1)
Proteasome subunit alpha n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MJT1_9EURY
qs_1_scaffold_2376_7
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5312..6217
DNA (906bp) protein (302aa)
Proteasome subunit beta {ECO:0000256|HAMAP-Rule:MF_02113}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_02113};; 20S proteasome beta subunit {ECO:0000256|HAMAP-Rule:MF_02113}; Proteasome core protein PsmB {
psmB; proteasome subunit beta (EC:3.4.25.1)
Proteasome subunit beta n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0M435_HALMO
qs_1_scaffold_2376_8
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6252..6617
DNA (366bp) protein (122aa)
Uncharacterized protein n=8 Tax=Pseudomonas syringae pv. actinidiae RepID=S6KT32_PSESF
Uncharacterized protein {ECO:0000313|EMBL:EPM65190.1}; TaxID=1104682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" sou
antibiotic biosynthesis monooxygenase
qs_1_scaffold_2376_9
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6846..8042
DNA (1197bp) protein (399aa)
Hydantoinase/carbamoylase family amidase n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LSG7_9EURY
Hydantoinase/carbamoylase family amidase {ECO:0000313|EMBL:EMA36083.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma laci
amidase, hydantoinase/carbamoylase family protein
qs_1_scaffold_2376_10
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8334..9413)
DNA (1080bp) protein (360aa)
Replication factor C small subunit 2 n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MDX1_HALMO
Replication factor C small subunit 2 {ECO:0000313|EMBL:EMA42884.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morr
rfcC; replication factor C small subunit 2
qs_1_scaffold_2376_11
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9502..10344
DNA (843bp) protein (281aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_0181
Ribonuclease Z n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RTB1_HALTV
ribonuclease Z
qs_1_scaffold_2376_12
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10400..10591)
DNA (192bp) protein (64aa)
Transcription regulator-like protein n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0ELX7_9EURY
Transcription regulator-like protein {ECO:0000313|EMBL:ELZ47897.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriens
hypothetical protein
qs_1_scaffold_2376_13
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10588..10968)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LRZ8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA36251.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
hypothetical protein
qs_1_scaffold_2376_14
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11105..11305
DNA (201bp) protein (67aa)
Small CPxCG-related zinc finger protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XMV9_NATM8
small CPxCG-related zinc finger protein
Small CPxCG-related zinc finger protein {ECO:0000313|EMBL:CCQ35222.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomon
qs_1_scaffold_2376_15
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11371..13683)
DNA (2313bp) protein (771aa)
Bifunctional malic enzyme oxidoreductase/phosphotransacetylase {ECO:0000313|EMBL:EMA50979.1}; EC=1.1.1.40 {ECO:0000313|EMBL:EMA50979.1};; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; H
maeB2; malate dehydrogenase (oxaloacetate-decarboxylating) (EC:1.1.1.40)
Bifunctional malic enzyme oxidoreductase/phosphotransacetylase n=2 Tax=Halococcus RepID=M0N1J6_9EURY
qs_1_scaffold_2376_16
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13855..14337
DNA (483bp) protein (161aa)
Cytochrome aa3 controlling protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M1N9_9EURY
Cytochrome aa3 controlling protein {ECO:0000313|EMBL:EMA39747.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamel
ccp; cytochrome aa3 controlling protein
qs_1_scaffold_2376_17
unknown

Not on your lists

14456..14788
DNA (333bp) protein (111aa)

This feature has no annotations

qs_1_scaffold_2376_18
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14914..15303
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DDA8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ33450.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum J
hypothetical protein
qs_1_scaffold_2376_19
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15400..16689)
DNA (1290bp) protein (430aa)
Nadh dehydrogenase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MD29_9EURY
Nadh dehydrogenase {ECO:0000313|EMBL:EMA43258.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus DSM 5
nadh dehydrogenase
qs_1_scaffold_2376_20
unknown

Not on your lists

comp(16708..16971)
DNA (264bp) protein (88aa)

This feature has no annotations

qs_1_scaffold_2376_21
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16996..17973)
DNA (978bp) protein (326aa)
Diphosphomevalonate decarboxylase n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0M6T7_HALMO
Diphosphomevalonate decarboxylase {ECO:0000313|EMBL:EMA40339.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhua
diphosphomevalonate decarboxylase
qs_1_scaffold_2376_22
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18219..19127)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RYR3_HALTV
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB61881.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena turkmenica (strai
qs_1_scaffold_2376_23
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19406..19960)
DNA (555bp) protein (185aa)
fadB_2; enoyl-CoA hydratase II 2 (EC:4.2.1.17)
MaoC family protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IQX4_NATPD
MaoC domain protein {ECO:0000313|EMBL:CAI49470.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaonis (strain
qs_1_scaffold_2376_24
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19957..20577)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MSC0_HALMO
Uncharacterized protein {ECO:0000313|EMBL:EMA47639.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
thioesterase superfamily protein
qs_1_scaffold_2376_25
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20574..21701)
DNA (1128bp) protein (376aa)
3-hydroxybutyryl-CoA dehydrogenase n=2 Tax=Haloarcula hispanica RepID=G0HY82_HALHT
3-hydroxyacyl-CoA dehydrogenase
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:EMA11452.1}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula vallis
qs_1_scaffold_2376_26
unknown

Not on your lists

comp(22185..22334)
DNA (150bp) protein (50aa)

This feature has no annotations

qs_1_scaffold_2376_27
Halorubrum sp. J07HR59, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22356..23165
DNA (810bp) protein (270aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_001
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Halorubrum sp. J07HR59 RepID=U1QEQ3_9EURY
3-methyl-2-oxobutanoate hydroxymethyltransferase
qs_1_scaffold_2376_28
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(23241..23978)
DNA (738bp) protein (246aa)
ABC transporter related protein n=1 Tax=Halobacterium sp. DL1 RepID=G4IDY7_9EURY
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHG04855.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacteriu
livF2; ABC-type transport system ATP-binding protein (probable substrate branched-chain amino acids)
qs_1_scaffold_2376_29
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(23975..24358)
DNA (384bp) protein (128aa)
ABC-type transport system ATP-binding protein (Probable substrate branched-chain amino acids) n=1 Tax=Haloquadratum walsbyi (strain DSM 16854 / JCM 12705 / C23) RepID=G0LJG4_HALWC
livG; ABC-type branched-chain amino acid transport systems, ATP-binding protein I
ABC-type transport system ATP-binding protein (Probable substrate branched-chain amino acids) {ECO:0000313|EMBL:CCC40898.1}; TaxID=768065 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales;
qs_1_scaffold_2376_30
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24395..24748)
DNA (354bp) protein (118aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Haloquadratum walsbyi J07HQW1 RepID=U1PGC4_9EURY
livG; ABC-type branched-chain amino acid transport systems, ATP-binding protein I
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:ERG92682.1}; TaxID=1238424 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloqua
Displaying items 1-30 of 34 in total

View Taxonomy