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qs_2_scaffold_182

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_2_scaffold_182_trna_1
unknown

Not on your lists

168..238
DNA (71bp)
transferRNA
qs_2_scaffold_182_1
Monomastix sp. OKE-1, Monomastix, Monomastigales, Mamiellophyceae, Chlorophyta, Viridiplantae

Not on your lists

283..798
DNA (516bp) protein (172aa)
Photosystem I assembly protein Ycf3 n=1 Tax=Monomastix sp. (strain OKE-1) RepID=C0JWJ5_MONSK
Photosystem I assembly protein Ycf3 {ECO:0000256|HAMAP-Rule:MF_00439}; TaxID=141716 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Monomastigales; Monomastigaceae; Mon
ycf3; photosystem I assembly protein Ycf3
qs_2_scaffold_182_2
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

845..1090
DNA (246bp) protein (82aa)
Photosystem I iron-sulfur center {ECO:0000256|HAMAP-Rule:MF_01303}; EC=1.97.1.12 {ECO:0000256|HAMAP-Rule:MF_01303};; 9 kDa polypeptide {ECO:0000256|HAMAP-Rule:MF_01303}; PSI-C {ECO:0000256|HAMAP-Rule:
Photosystem I iron-sulfur center n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VGP1_9CYAN
Photosystem I iron-sulfur center
qs_2_scaffold_182_trna_2
unknown

Not on your lists

1230..1301
DNA (72bp)
transferRNA
qs_2_scaffold_182_trna_3
unknown

Not on your lists

1317..1390
DNA (74bp)
transferRNA
qs_2_scaffold_182_trna_4
unknown

Not on your lists

1451..1533
DNA (83bp)
transferRNA
qs_2_scaffold_182_trna_5
unknown

Not on your lists

1562..1634
DNA (73bp)
transferRNA
qs_2_scaffold_182_trna_6
unknown

Not on your lists

1659..1730
DNA (72bp)
transferRNA
qs_2_scaffold_182_3
Oocystis solitaria, Oocystis, Chlorellales, Trebouxiophyceae, Chlorophyta, Viridiplantae

Not on your lists

1815..3242
DNA (1428bp) protein (476aa)
Ribulose bisphosphate carboxylase large chain {ECO:0000256|HAMAP-Rule:MF_01338}; Short=RuBisCO large subunit {ECO:0000256|HAMAP-Rule:MF_01338};; EC=4.1.1.39 {ECO:0000256|HAMAP-Rule:MF_01338};; TaxID=1
ribulose 1,5-bisphosphate carboxylase large subunit (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain n=2 Tax=Oocystis RepID=C7BEH6_OOCSO
qs_2_scaffold_182_trna_7
unknown

Not on your lists

3379..3450
DNA (72bp)
transferRNA
qs_2_scaffold_182_trna_26
unknown

Not on your lists

comp(3651..3721)
DNA (71bp)
transferRNA
qs_2_scaffold_182_4
Pabia signiensis, Pabia, Prasiolales, Trebouxiophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(3921..4037)
DNA (117bp) protein (39aa)
Cytochrome b6-f complex subunit 5 n=2 Tax=Chara vulgaris RepID=PETG_CHAVU
Cytochrome b6-f complex subunit 5 {ECO:0000256|HAMAP-Rule:MF_00432}; Cytochrome b6-f complex subunit PetG {ECO:0000256|HAMAP-Rule:MF_00432}; Cytochrome b6-f complex subunit V {ECO:0000256|HAMAP-Rule:M
Cytochrome B6-F complex subunit 5
qs_2_scaffold_182_5
Roya anglica, Roya, Zygnematales, Zygnemophyceae, Streptophyta, Viridiplantae

Not on your lists

comp(4358..4480)
DNA (123bp) protein (41aa)
Photosystem II reaction center protein J n=1 Tax=Cicer arietinum RepID=B5LMN8_CICAR
Photosystem II reaction center protein J {ECO:0000256|HAMAP-Rule:MF_01305}; Short=PSII-J {ECO:0000256|HAMAP-Rule:MF_01305};; TaxID=43943 species="Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae
PsbJ
qs_2_scaffold_182_6
Xylochloris irregularis, Xylochloris, Trebouxiophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(4673..4798)
DNA (126bp) protein (42aa)
Cytochrome b559 subunit beta n=1 Tax=Monomastix sp. (strain OKE-1) RepID=C0JWM1_MONSK
Cytochrome b559 subunit beta {ECO:0000256|HAMAP-Rule:MF_00643, ECO:0000256|RuleBase:RU004529}; PSII reaction center subunit VI {ECO:0000256|HAMAP-Rule:MF_00643, ECO:0000256|RuleBase:RU004529}; TaxID=4
cytochrome b559, subunit beta
qs_2_scaffold_182_7
Monomastix sp. OKE-1, Monomastix, Monomastigales, Mamiellophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(4873..5115)
DNA (243bp) protein (81aa)
Cytochrome b559 subunit alpha n=1 Tax=Monomastix sp. (strain OKE-1) RepID=C0JWM0_MONSK
Cytochrome b559 subunit alpha {ECO:0000256|HAMAP-Rule:MF_00642, ECO:0000256|RuleBase:RU004529}; PSII reaction center subunit V {ECO:0000256|HAMAP-Rule:MF_00642, ECO:0000256|RuleBase:RU004529}; TaxID=1
cytochrome b559, subunit alpha
qs_2_scaffold_182_trna_25
unknown

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comp(5188..5271)
DNA (84bp)
transferRNA
qs_2_scaffold_182_8
Porphyra umbilicalis, Porphyra, Bangiales, Bangiophyceae, Eukaryota

Not on your lists

comp(5529..8402)
DNA (2874bp) protein (958aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
RNA polymerase beta'' subunit n=1 Tax=Porphyra umbilicalis RepID=J7F9J3_PORUM
RNA polymerase beta'' subunit {ECO:0000313|EMBL:AFC39919.1}; TaxID=2786 species="Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra.;" source="Porphyra umbilicalis (Purple laver) (R
qs_2_scaffold_182_9
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists


comp(8588..8779)
DNA (192bp) protein (64aa)
30S ribosomal protein S18 n=2 Tax=Lyngbya RepID=A0YR62_LYNSP
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
SSU ribosomal protein S18P
qs_2_scaffold_182_10
Ettlia pseudoalveolaris, Ettlia, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(8864..9802)
DNA (939bp) protein (313aa)
Apocytochrome f n=1 Tax=Micromonas sp. (strain RCC299 / NOUM17) RepID=C1KR40_MICSR
Cytochrome f {ECO:0000256|HAMAP-Rule:MF_00610}; Flags: Precursor;; TaxID=3102 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadales incertae sedis; Ettlia
apocytochrome f
qs_2_scaffold_182_trna_24
unknown

Not on your lists

comp(9959..10030)
DNA (72bp)
transferRNA
qs_2_scaffold_182_trna_23
unknown

Not on your lists

comp(10063..10136)
DNA (74bp)
transferRNA
qs_2_scaffold_182_trna_22
unknown

Not on your lists

comp(10219..10305)
DNA (87bp)
transferRNA
qs_2_scaffold_182_11
Pedinomonas minor, Pedinomonas, Pedinomonadales, Pedinophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(10435..10665)
DNA (231bp) protein (77aa)
Photosystem II reaction center protein H n=1 Tax=Pedinomonas minor RepID=C7BEL3_PEDMN
Photosystem II reaction center protein H {ECO:0000256|HAMAP-Rule:MF_00752}; Short=PSII-H {ECO:0000256|HAMAP-Rule:MF_00752};; TaxID=3159 species="Eukaryota; Viridiplantae; Chlorophyta; Pedinophyceae; P
psbH; photosystem II reaction center protein H
qs_2_scaffold_182_12
Stigeoclonium helveticum, Stigeoclonium, Chaetophorales, Chlorophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(10678..10812)
DNA (135bp) protein (45aa)
Protein PsbN n=1 Tax=Stigeoclonium helveticum RepID=PSBN_STIHE
Protein PsbN {ECO:0000255|HAMAP-Rule:MF_00293}; TaxID=55999 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chaetophorales; Chaetophorales incertae sedis; Stigeoclonium.;" source="Stige
psbN; photosystem II protein N; K02715 PsbN protein
qs_2_scaffold_182_13
Volvox carteri, Volvox, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(10835..10930)
DNA (96bp) protein (32aa)
Photosystem II reaction center protein T {ECO:0000256|HAMAP-Rule:MF_00808}; Short=PSII-T {ECO:0000256|HAMAP-Rule:MF_00808};; TaxID=3068 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; C
qs_2_scaffold_182_14
Pyramimonas parkeae, Pyramimonas, Pyramimonadales, Chlorophyta, Viridiplantae

Not on your lists

comp(10946..12472)
DNA (1527bp) protein (509aa)
Photosystem II CP47 chlorophyll apoprotein n=1 Tax=Pyramimonas parkeae RepID=C0JWZ3_9CHLO
Photosystem II CP47 reaction center protein {ECO:0000256|HAMAP-Rule:MF_01495, ECO:0000256|RuleBase:RU004535}; PSII 47 kDa protein {ECO:0000256|HAMAP-Rule:MF_01495}; Protein CP-47 {ECO:0000256|HAMAP-Ru
photosystem II chlorophyll-binding protein CP47
qs_2_scaffold_182_15
Pyramimonas parkeae, Pyramimonas, Pyramimonadales, Chlorophyta, Viridiplantae

Not on your lists

comp(12622..13212)
DNA (591bp) protein (197aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-R
protease subunit of ATP-dependent protease (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pyramimonas parkeae RepID=C0JWZ4_9CHLO
qs_2_scaffold_182_16
Calliarthron tuberculosum, Calliarthron, Corallinales, Corallinophycidae, Eukaryota

Not on your lists

comp(13281..14177)
DNA (897bp) protein (299aa)
Cytochrome c biogenesis protein CcsA n=1 Tax=Calliarthron tuberculosum RepID=M4IU90_CALTB
Cytochrome c biogenesis protein CcsA {ECO:0000256|HAMAP-Rule:MF_01391}; TaxID=48942 species="Eukaryota; Rhodophyta; Florideophyceae; Corallinophycidae; Corallinales; Corallinaceae; Corallinoideae; Cal
ccsA; c-type cytochrome synthesis protein CcsA
qs_2_scaffold_182_trna_21
unknown

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comp(14217..14289)
DNA (73bp)
transferRNA
qs_2_scaffold_182_trna_20
unknown

Not on your lists

comp(14324..14397)
DNA (74bp)
transferRNA
Displaying items 1-30 of 91 in total

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