ggKbase home page

qs_3_scaffold_1

Search features with annotation key words

Displaying items 1-30 of 141 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_3_scaffold_1_1
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..747)
DNA (747bp) protein (249aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cys
dhkJ; Hybrid signal transduction histidine kinase J (EC:2.7.13.3)
Hybrid signal transduction histidine kinase J n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FHB4_STIAD
qs_3_scaffold_1_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(974..2104)
DNA (1131bp) protein (377aa)
Fe(3+) ions import ATP-binding protein fbpC {ECO:0000313|EMBL:CBH25539.1}; EC=3.6.3.30 {ECO:0000313|EMBL:CBH25539.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae s
Fe(3+) ions import ATP-binding protein fbpC n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HBY4_SALRM
fbpC; Fe(3+) ions import ATP-binding protein fbpC
qs_3_scaffold_1_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(2101..3798)
DNA (1698bp) protein (566aa)
Ferric transport system permease protein fbpB n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HBY5_SALRM
fbpB; ferric transport system permease fbpB
Ferric transport system permease protein fbpB {ECO:0000313|EMBL:CBH25540.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" sou
qs_3_scaffold_1_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(3841..4953)
DNA (1113bp) protein (371aa)
iron ABC transporter substrate-binding protein n=1 Tax=Salisaeta longa RepID=UPI0003B7AEAC
fbpA; Iron(III)-binding periplasmic protein
Iron(III)-binding periplasmic protein [Precursor] {ECO:0000313|EMBL:CBH25541.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;"
qs_3_scaffold_1_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

5312..6667
DNA (1356bp) protein (452aa)
Amino acid transporter n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7Y6_SALRM
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:CBH24141.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber
qs_3_scaffold_1_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

6699..7370
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7Y5_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24140.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_3_scaffold_1_7
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

7451..7984
DNA (534bp) protein (178aa)
Appr-1-p processing protein n=1 Tax=Salisaeta longa RepID=UPI0003B7146F
Appr-1-p processing
Appr-1-p processing {ECO:0000313|EMBL:ABG03629.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacte
qs_3_scaffold_1_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(8050..8553)
DNA (504bp) protein (168aa)
Acetyltransferase, GNAT family n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HD32_SALRM
GNAT family acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:CBH25937.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibact
qs_3_scaffold_1_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8628..10412)
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YG60_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP41848.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
qs_3_scaffold_1_10
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11061..12329)
DNA (1269bp) protein (423aa)
membrane dipeptidase (EC:3.4.13.19)
Membrane dipeptidase {ECO:0000313|EMBL:ACY47724.1}; EC=3.4.13.19 {ECO:0000313|EMBL:ACY47724.1};; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedi
Membrane dipeptidase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MGT9_RHOM4
qs_3_scaffold_1_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

12493..14124
DNA (1632bp) protein (544aa)
Na+/H+ antiporter family n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S3G8_SALRD
Na(+)/H(+) antiporter family protein
Na+/H+ antiporter family {ECO:0000313|EMBL:ABC45613.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rub
qs_3_scaffold_1_12
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

14271..15452
DNA (1182bp) protein (394aa)
Peptidase S58 DmpA n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SL16_RHOMR
peptidase S58 DmpA
Peptidase S58 DmpA {ECO:0000313|EMBL:AEN74309.1}; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rho
qs_3_scaffold_1_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

15529..17343
DNA (1815bp) protein (605aa)
Gamma-glutamyltransferase {ECO:0000313|EMBL:ABC46173.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ABC46173.1};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermace
Gamma-glutamyltransferase n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2RZ73_SALRD
ggt; gamma-glutamyltransferase
qs_3_scaffold_1_14
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17354..18322
DNA (969bp) protein (323aa)
Oxidoreductase domain protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SIG9_RHOMR
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AEN74445.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermu
qs_3_scaffold_1_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18379..19401
DNA (1023bp) protein (341aa)
Putative stomatin-like transmembrane protein {ECO:0000313|EMBL:CBH24846.1}; EC=3.4.-.- {ECO:0000313|EMBL:CBH24846.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae s
SPFH domain-containing protein
HflC; stomatin-like transmembrane protein id=24659680 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
qs_3_scaffold_1_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19404..19793)
DNA (390bp) protein (130aa)
Uncharacterized protein id=4956288 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
qs_3_scaffold_1_17
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(19790..20080)
DNA (291bp) protein (97aa)
DNA polymerase beta domain-containing protein region Tax=RBG_16_Chloroflexi_57_11_curated
DNA polymerase, beta-like region id=3296181 bin=GWF2_Planctomycete_41_51 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
putative nucleotidyltransferase
qs_3_scaffold_1_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20225..21898
DNA (1674bp) protein (558aa)
tRNA nucleotidyltransferase/poly(A) polymerase family protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2RZU6_SALRD
tRNA nucleotidyltransferase/poly(A) polymerase family protein
tRNA nucleotidyltransferase/poly(A) polymerase family protein {ECO:0000313|EMBL:ABC44440.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Sal
qs_3_scaffold_1_19
unknown

Not on your lists

21910..22041
DNA (132bp) protein (44aa)

This feature has no annotations

qs_3_scaffold_1_20
Vibrio ichthyoenteri, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22219..22392
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Vibrio sp. 16 RepID=B8K423_9VIBR
Membrane protein {ECO:0000313|EMBL:KIE22683.1}; TaxID=142461 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio ichthyoenteri.;"
hypothetical protein
qs_3_scaffold_1_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(22476..22949)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B5B16A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC46221.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_3_scaffold_1_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(23034..24023)
DNA (990bp) protein (330aa)
glycine betaine ABC transporter glycine betaine-binding protein; K02002 glycine betaine/proline transport system substrate-binding protein id=24657283 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
glycine betaine ABC transporter glycine betaine-binding protein
Glycine betaine ABC transporter glycine betaine-binding protein {ECO:0000313|EMBL:CBH23431.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; S
qs_3_scaffold_1_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(24116..25009)
DNA (894bp) protein (298aa)
proline/glycine betaine ABC transporter permease; K02001 glycine betaine/proline transport system permease protein id=24657282 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
proline/glycine betaine ABC transporter permease
ABC-type proline/glycine betaine transport system, permease component {ECO:0000313|EMBL:CBH23430.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermac
qs_3_scaffold_1_24
Salinispira pacifica, Salinispira, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(25128..26552)
DNA (1425bp) protein (475aa)
Glycine betaine ABC transport system, ATP-binding protein OpuAA (EC:3.6.3.32)
Salinispira pacifica strain L21-RPul-D2, complete genome {ECO:0000313|EMBL:AHC16767.1}; EC=3.6.3.32 {ECO:0000313|EMBL:AHC16767.1};; TaxID=1307761 species="Bacteria; Spirochaetes; Spirochaetales; Spiro
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI0003817271
qs_3_scaffold_1_25
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

26944..27495
DNA (552bp) protein (184aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Sa
phosphoesterase
phosphoesterase; K07095 id=24657865 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
qs_3_scaffold_1_26
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

27687..28547
DNA (861bp) protein (287aa)
Deoxyadenosine kinase {ECO:0000313|EMBL:AEN74238.1}; EC=2.7.1.76 {ECO:0000313|EMBL:AEN74238.1};; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedi
deoxynucleoside kinase n=1 Tax=Salisaeta longa RepID=UPI0003B3D3C1
deoxynucleoside kinase
qs_3_scaffold_1_27
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

28552..30750
DNA (2199bp) protein (733aa)
hypothetical protein id=24659209 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24374.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_3_scaffold_1_28
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

30933..31949
DNA (1017bp) protein (339aa)
epimerase/reductase
epimerase/reductase id=24657234 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Epimerase/reductase, putative {ECO:0000313|EMBL:CBH23380.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
qs_3_scaffold_1_29
Xenococcus sp. PCC 7305, Xenococcus, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

32008..33261
DNA (1254bp) protein (418aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransfera
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Xenococcus sp. PCC 7305 RepID=L8M4M1_9CYAN
qs_3_scaffold_1_trna_1
unknown

Not on your lists

33366..33439
DNA (74bp)
transferRNA
Displaying items 1-30 of 141 in total

View Taxonomy