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qs_3_scaffold_342

Search features with annotation key words

Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_3_scaffold_342_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

168..1670
DNA (1503bp) protein (501aa)
UDP-glucose/GDP-mannose dehydrogenase {ECO:0000313|EMBL:CBH23639.1}; EC=1.1.1.22 {ECO:0000313|EMBL:CBH23639.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis;
UDP-N-acetyl-D-glucosamine dehydrogenase n=1 Tax=Salisaeta longa RepID=UPI0003B7070C
tuaD; UDP-glucose/GDP-mannose dehydrogenase
qs_3_scaffold_342_2
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1737..3521)
DNA (1785bp) protein (595aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B50F89
Uncharacterized protein {ECO:0000313|EMBL:EJF10306.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
hypothetical protein
qs_3_scaffold_342_3
unknown

Not on your lists

comp(3914..4705)
DNA (792bp) protein (264aa)

This feature has no annotations

qs_3_scaffold_342_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(4821..5555)
DNA (735bp) protein (245aa)
cell envelope biogenesis protein OmpA n=1 Tax=Salisaeta longa RepID=UPI0003B3CCAB
OmpA family protein {ECO:0000313|EMBL:ABC44333.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (s
ompA; outer membrane protein A
qs_3_scaffold_342_5
unknown

Not on your lists

comp(5699..6670)
DNA (972bp) protein (324aa)

This feature has no annotations

qs_3_scaffold_342_6
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6788..7117
DNA (330bp) protein (110aa)
Tax=RBG_16_Deltaproteobacteria_71_12_curated
qs_3_scaffold_342_7
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

7126..7545
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Synechococcus sp. PCC 7336 RepID=UPI00035ED5C8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK40227.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
qs_3_scaffold_342_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

7667..10291
DNA (2625bp) protein (875aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=309807 species="Bacteria; Bacte
DNA mismatch repair protein MutS n=1 Tax=Salisaeta longa RepID=UPI0003B47256
MutS2 family protein
qs_3_scaffold_342_9
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10400..11368
DNA (969bp) protein (323aa)
glyoxylate reductase (EC:1.1.1.26)
Glyoxylate reductase {ECO:0000313|EMBL:AEN74052.1}; EC=1.1.1.26 {ECO:0000313|EMBL:AEN74052.1};; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
Glyoxylate reductase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SGQ5_RHOMR
qs_3_scaffold_342_10
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

11549..13768
DNA (2220bp) protein (740aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B45FBC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL98950.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
qs_3_scaffold_342_11
Gramella forsetii, Gramella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14045..15061
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0LZF5_GRAFK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL65750.1}; TaxID=411154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gramella.;" source="Gramella forsetii (strain
qs_3_scaffold_342_12
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15118..16146
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BQ63_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ERM82710.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 =
hypothetical protein
qs_3_scaffold_342_13
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16463..16918
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MG74_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY47630.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source
qs_3_scaffold_342_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16973..21361
DNA (4389bp) protein (1463aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
Sensory transduction histidine kinase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H6U4_SALRM
ntrB; sensory transduction histidine kinase
qs_3_scaffold_342_15
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21644..22699
DNA (1056bp) protein (352aa)
Ribonuclease BN n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZF9_HALO1
ribonuclease BN
Ribonuclease BN {ECO:0000313|EMBL:ACY16421.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochrace
qs_3_scaffold_342_16
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

Not on your lists

23006..23572
DNA (567bp) protein (189aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1266370 species="Ba
inorganic diphosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YVH0_9BACT
qs_3_scaffold_342_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(23833..24363)
DNA (531bp) protein (177aa)
hypothetical protein
hypothetical protein id=24658933 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24131.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_3_scaffold_342_18
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(24520..25458)
DNA (939bp) protein (313aa)
porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sed
Delta-aminolevulinic acid dehydratase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MGE7_RHOM4
qs_3_scaffold_342_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(26395..27078)
DNA (684bp) protein (228aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysteinyl-tRNA synthetase n=1 Tax=Salisaeta longa RepID=UPI0003B34395
cysS; cysteinyl-tRNA synthetase
qs_3_scaffold_342_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

27131..27337
DNA (207bp) protein (69aa)
hypothetical protein
hypothetical protein id=24658948 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24146.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_3_scaffold_342_21
RLO_PLX_64_10, Bacteria

Not on your lists

comp(27376..29658)
DNA (2283bp) protein (761aa)
ABC transporter permease n=1 Tax=Spirosoma panaciterrae RepID=UPI0003797400
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
hypothetical protein
qs_3_scaffold_342_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(29759..30406)
DNA (648bp) protein (216aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Putative signal peptidase I n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE20_GEMAT
putative signal peptidase I
qs_3_scaffold_342_23
CNBR_ACIDO, CNBR_ACIDO, CNBR_ACIDO, CNBR_ACIDO, Acidobacteria, Bacteria

Not on your lists

comp(30403..30792)
DNA (390bp) protein (130aa)
hypothetical protein id=12553989 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein id=12553989 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
qs_3_scaffold_342_24
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30789..31235)
DNA (447bp) protein (149aa)
AraC family transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6524E
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32302.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
AraC family transcriptional regulator
qs_3_scaffold_342_25
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(31800..32336)
DNA (537bp) protein (179aa)
Molybdenum cofactor synthesis domain protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SFG2_RHOMR
molybdenum cofactor synthesis domain-containing protein
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" sour
qs_3_scaffold_342_26
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

32788..33186
DNA (399bp) protein (133aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MGF2_RHOM4
phosphoribosyl-AMP cyclohydrolase
qs_3_scaffold_342_27
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

33295..33774
DNA (480bp) protein (160aa)
mitochondrial benzodiazepine receptor/sensory transduction protein
mitochondrial benzodiazepine receptor/sensory transduction protein; K07185 tryptophan-rich sensory protein id=24658944 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Mitochondrial benzodiazepine receptor/sensory transduction protein {ECO:0000313|EMBL:CBH24142.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae
qs_3_scaffold_342_28
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(33849..35474)
DNA (1626bp) protein (542aa)
NAD dependent epimerase/dehydratase family n=2 Tax=Salinibacter ruber RepID=D5H7Y8_SALRM
NAD dependent epimerase/dehydratase family
NAD dependent epimerase/dehydratase family {ECO:0000313|EMBL:CBH24143.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source
qs_3_scaffold_342_29
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

35808..36017
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B33762
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ15528.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotgal
qs_3_scaffold_342_30
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

36356..36790
DNA (435bp) protein (145aa)
hypothetical protein
hypothetical protein id=24658947 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24145.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
Displaying 30 items

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