ggKbase home page

qs_3_scaffold_230

Search features with annotation key words

Displaying items 1-30 of 56 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_3_scaffold_230_1
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3..602
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MCU2_HALMO
Uncharacterized protein {ECO:0000313|EMBL:EMA42225.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
hypothetical protein
qs_3_scaffold_230_2
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(646..1020)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MTL0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA49047.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
qs_3_scaffold_230_3
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1117..1284)
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Halococcus RepID=M0MQG0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA47871.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
qs_3_scaffold_230_4
unknown

Not on your lists

comp(1888..2154)
DNA (267bp) protein (89aa)

This feature has no annotations

qs_3_scaffold_230_5
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2350..3228)
DNA (879bp) protein (293aa)
tRNA methyltransferase complex GCD14 subunit n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MXB1_9EURY
tRNA methyltransferase complex GCD14 subunit {ECO:0000313|EMBL:EMA49045.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Haloco
tRNA methyltransferase complex GCD14 subunit
qs_3_scaffold_230_6
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3225..3656)
DNA (432bp) protein (144aa)
Nascent polypeptide-associated complex protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MW56_9EURY
Nascent polypeptide-associated complex protein {ECO:0000256|HAMAP-Rule:MF_00814}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="
nac; nascent polypeptide-associated complex protein
qs_3_scaffold_230_7
Natrialba asiatica, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3743..4297)
DNA (555bp) protein (185aa)
PUA domain-containing protein n=1 Tax=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) RepID=M0AJB0_NATA1
PUA domain-containing protein {ECO:0000313|EMBL:ELY98604.1}; TaxID=29540 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba asiatica (strain ATC
prefoldin alpha subunit
qs_3_scaffold_230_8
unknown

Not on your lists

4488..4667
DNA (180bp) protein (60aa)

This feature has no annotations

qs_3_scaffold_230_9
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4822..5319)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CHE4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ22715.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
conserved hypothetical protein (DUF88)
qs_3_scaffold_230_10
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5883..6845
DNA (963bp) protein (321aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418};; TaxID=1227457 specie
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MZ41_9EURY
qs_3_scaffold_230_11
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6842..7687
DNA (846bp) protein (282aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102};; TaxID=1132509 spe
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LPR3_9EURY
dihydrodipicolinate reductase
qs_3_scaffold_230_12
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7684..8538
DNA (855bp) protein (285aa)
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase {ECO:0000313|EMBL:EMA44961.1}; EC=2.3.1.117 {ECO:0000313|EMBL:EMA44961.1};; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117)
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MGX1_9EURY
qs_3_scaffold_230_13
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8535..9815
DNA (1281bp) protein (427aa)
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8DB14_HALXS
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120
qs_3_scaffold_230_14
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9816..11234)
DNA (1419bp) protein (473aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MVB1_9EURY
qs_3_scaffold_230_15
Natronorubrum bangense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11345..16375)
DNA (5031bp) protein (1677aa)
Signal-transducing histidine kinase n=1 Tax=Natronorubrum bangense JCM 10635 RepID=L9W754_9EURY
Signal-transducing histidine kinase {ECO:0000313|EMBL:ELY44163.1}; TaxID=1227500 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum bang
multi-sensor signal transduction histidine kinase
qs_3_scaffold_230_16
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16651..18276
DNA (1626bp) protein (542aa)
Phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NQG2_HALBP
phosphoribosylformylglycinamidine synthase, clade II
Phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent {ECO:0000313|EMBL:ADQ67835.1}; TaxID=469382 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae;
qs_3_scaffold_230_17
unknown

Not on your lists

comp(18310..18624)
DNA (315bp) protein (105aa)

This feature has no annotations

qs_3_scaffold_230_18
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18632..20551
DNA (1920bp) protein (640aa)
Dihydropteroate synthase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MG96_9EURY
Dihydropteroate synthase {ECO:0000313|EMBL:EMA44731.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
dihydropteroate synthase
qs_3_scaffold_230_19
unknown

Not on your lists

comp(20644..21015)
DNA (372bp) protein (124aa)

This feature has no annotations

qs_3_scaffold_230_20
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21117..21629
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J8X8_HALJB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ14313.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotgal
qs_3_scaffold_230_21
Haloferax sp. Arc-Hr, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21838..22707
DNA (870bp) protein (290aa)
Protein-export membrane protein SecF n=1 Tax=Haloferax sulfurifontis ATCC BAA-897 RepID=M0HX37_9EURY
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1476858 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. A
secF; preprotein translocase subunit SecF
qs_3_scaffold_230_22
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22704..24290
DNA (1587bp) protein (529aa)
Protein-export membrane protein SecD n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M4E5_9EURY
Protein-export membrane protein SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus
preprotein translocase subunit secd
qs_3_scaffold_230_23
Natrinema altunense, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24454..24921)
DNA (468bp) protein (156aa)
GCN5-related N-acetyltransferase n=1 Tax=Natrinema altunense JCM 12890 RepID=L9ZKP5_9EURY
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ELY86127.1}; TaxID=1227494 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema altunense JCM 1
GCN5-like N-acetyltransferase
qs_3_scaffold_230_24
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24941..25651)
DNA (711bp) protein (237aa)
rnase hii (EC:3.1.26.4)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052};; TaxID=469382 species="Archaea; Euryarchaeota; Ha
Ribonuclease HII n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NMM1_HALBP
qs_3_scaffold_230_25
unknown

Not on your lists

comp(25730..25939)
DNA (210bp) protein (70aa)

This feature has no annotations

qs_3_scaffold_230_26
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

25987..26310
DNA (324bp) protein (108aa)
DNA binding domain-containing protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QV11_9EURY
DNA binding domain-containing protein {ECO:0000313|EMBL:EFW91529.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus
DNA binding domain-containing protein
qs_3_scaffold_230_27
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

26288..26677
DNA (390bp) protein (130aa)
DNA binding domain-containing protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MQD7_9EURY
DNA binding domain-containing protein {ECO:0000313|EMBL:EMA46690.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus sa
DNA binding domain-containing protein
qs_3_scaffold_230_28
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(27235..28164)
DNA (930bp) protein (310aa)
Cysteine synthase n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DG93_9EURY
Cysteine synthase {ECO:0000313|EMBL:ELZ34480.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum JCM 148
cysteine synthase
qs_3_scaffold_230_29
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

28341..28826
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J4Q6_HALJB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ15523.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotgal
qs_3_scaffold_230_30
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

28823..30418
DNA (1596bp) protein (532aa)
Na+/proline symporter n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MNE6_9EURY
Na+/proline symporter {ECO:0000313|EMBL:EMA47217.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus DS
Na+/proline symporter
Displaying items 1-30 of 56 in total

View Taxonomy