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qs_4_scaffold_3430

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_4_scaffold_3430_1
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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96..1331
DNA (1236bp) protein (412aa)
Translation initiation factor 2 subunit gamma n=1 Tax=Halobacterium sp. DL1 RepID=G4IEE9_9EURY
Translation initiation factor 2 subunit gamma {ECO:0000256|HAMAP-Rule:MF_00119}; aIF2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; eIF-2-gamma {ECO:0000256|HAMAP-Rule:MF_00119}; TaxID=751944 species="Arch
eif2g; translation initiation factor IF-2 subunit gamma
qs_4_scaffold_3430_2
Halanaeroarchaeum sulfurireducens, Halanaeroarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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1337..1708
DNA (372bp) protein (124aa)
Putative RNA-binding protein n=1 Tax=Haloferax mucosum ATCC BAA-1512 RepID=M0IBP5_9EURY
Putative RNA-binding protein {ECO:0000313|EMBL:AKH98453.1}; TaxID=1604004 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halanaeroarchaeum.;" source="Halanaeroarchae
PilT N-term./Vapc superfamily-like protein
qs_4_scaffold_3430_3
Natronorubrum sulfidifaciens, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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1709..2278
DNA (570bp) protein (190aa)
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:ELY45070.1}; EC=2.7.7.6 {ECO:0000313|EMBL:ELY45070.1};; TaxID=1230460 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae
DNA-directed RNA polymerase (EC:2.7.7.6)
DNA-directed RNA polymerase subunit E n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9W6G7_9EURY
qs_4_scaffold_3430_4
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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2278..2478
DNA (201bp) protein (67aa)
Transcription elongation factor Spt4 n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4WAC6_9EURY
DNA-directed RNA polymerase subunit E
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum
qs_4_scaffold_3430_5
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2489..3010
DNA (522bp) protein (174aa)
UPF0218 protein HacjB3_03895 n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J857_HALJB
hypothetical protein
UPF0218 protein HacjB3_03895 {ECO:0000256|HAMAP-Rule:MF_00590}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccu
qs_4_scaffold_3430_6
Natronococcus occultus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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3068..3358
DNA (291bp) protein (97aa)
30S ribosomal protein S24e n=1 Tax=Natronococcus occultus SP4 RepID=L0K0R9_9EURY
ribosomal protein S24E
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545}; TaxID=694430 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus occultus S
qs_4_scaffold_3430_7
Halanaeroarchaeum sulfurireducens, Halanaeroarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3358..3489
DNA (132bp) protein (44aa)
30S ribosomal protein S27ae n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P269_HALMD
30S ribosomal protein S27ae {ECO:0000313|EMBL:AKH98448.1}; TaxID=1604004 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halanaeroarchaeum.;" source="Halanaeroarchaeu
30S ribosomal protein S27a
qs_4_scaffold_3430_8
unknown

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comp(4059..4772)
DNA (714bp) protein (238aa)

This feature has no annotations

qs_4_scaffold_3430_9
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4821..5036
DNA (216bp) protein (72aa)
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein n=2 Tax=Halarchaeum acidiphilum RepID=U3A7I6_9EURY
Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein {ECO:0000256|HAMAP-Rule:MF_01447}; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteria
O-sialoglycoprotein endopeptidase/protein kinase
qs_4_scaffold_3430_10
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5139..5957)
DNA (819bp) protein (273aa)
Transcriptional regulator, TrmB n=1 Tax=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) RepID=C7NSZ1_HALUD
transcriptional regulator, TrmB
Transcriptional regulator, TrmB {ECO:0000313|EMBL:ACV12066.1}; TaxID=519442 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus utahens
qs_4_scaffold_3430_11
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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6303..8225
DNA (1923bp) protein (641aa)
Transcription initiation factor IIB n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0C8H9_9EURY
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natria
transcription initiation factor IIB
Displaying 11 items

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