ggKbase home page

qs_4_scaffold_375

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_4_scaffold_375_1
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

336..1202
DNA (867bp) protein (289aa)
ABC transporter permease n=2 Tax=Oligotropha carboxidovorans RepID=F8BH33_OLICM
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RBG_16_KB1_OP1_55_9_curated
ABC transporter permease
qs_4_scaffold_375_2
unknown

Not on your lists

comp(1283..1552)
DNA (270bp) protein (90aa)

This feature has no annotations

qs_4_scaffold_375_3
Haloferax sp. ATCC BAA-644, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1725..2201
DNA (477bp) protein (159aa)
Putative branched-chain amino acids ABC transporter permease n=3 Tax=Haloferax RepID=M0FHJ2_9EURY
Putative branched-chain amino acids ABC transporter permease {ECO:0000313|EMBL:ELZ69402.1}; TaxID=1227462 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" sou
livM1; putative branched-chain amino acids ABC transporter permease
qs_4_scaffold_375_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2194..2940
DNA (747bp) protein (249aa)
Branched-chain amino acid ABC transporter ATP-binding protein n=3 Tax=Haloferax RepID=M0FGZ4_9EURY
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
livG4; branched-chain amino acid ABC transporter ATP-binding protein
qs_4_scaffold_375_5
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

2940..3638
DNA (699bp) protein (233aa)
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family id=3772781 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter
qs_4_scaffold_375_6
Halorubrum aidingense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3635..4630
DNA (996bp) protein (332aa)
Leucyl aminopeptidase n=1 Tax=Halorubrum aidingense JCM 13560 RepID=M0PKS5_9EURY
Leucyl aminopeptidase {ECO:0000313|EMBL:EMA70518.1}; TaxID=1230454 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum aidingense JCM 13560.;
hypothetical protein
qs_4_scaffold_375_7
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4722..5483)
DNA (762bp) protein (254aa)
IclR family transcriptional regulator n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0CXP7_9EURY
IclR family transcriptional regulator {ECO:0000313|EMBL:ELZ27985.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometri
IclR family transcriptional regulator
qs_4_scaffold_375_8
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5703..6587)
DNA (885bp) protein (295aa)
4-hydroxy-2-oxovalerate aldolase (EC:4.1.3.39)
4-hydroxy-2-oxovalerate aldolase n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0CXN1_9EURY
4-hydroxy-2-oxovalerate aldolase {ECO:0000313|EMBL:ELZ27970.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum p
qs_4_scaffold_375_9
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6727..7803
DNA (1077bp) protein (359aa)
Oxidoreductase domain-containing protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0CXM3_9EURY
Oxidoreductase domain-containing protein {ECO:0000313|EMBL:ELZ27971.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeome
oxidoreductase domain-containing protein
qs_4_scaffold_375_10
Halostagnicola sp. A56, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7803..9041
DNA (1239bp) protein (413aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0CZC6_9EURY
Gluconate dehydratase {ECO:0000313|EMBL:KDE60555.1}; TaxID=1495067 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola sp. A56.;"
D-gluconate dehydratase
qs_4_scaffold_375_11
Thermotoga neapolitana, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

9100..10092
DNA (993bp) protein (331aa)
Inner-membrane translocator n=2 Tax=Thermotoga RepID=B9KBL9_THENN
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACM22415.1}; TaxID=309803 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga neapolitana (strain ATCC 49049 /
qs_4_scaffold_375_12
S_OP1_64_32, KB1, Bacteria

Not on your lists

10098..10901
DNA (804bp) protein (268aa)
ABC transporter related n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AV99_RUBXD
ABC transporter related Tax=S_OP1_64_32
ABC transporter-like protein
qs_4_scaffold_375_13
Thermotoga sp. Cell2, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

11111..12226
DNA (1116bp) protein (372aa)
Sugar binding protein of ABC transporter n=2 Tax=Thermotoga RepID=B9KBM0_THENN
Sugar binding protein of ABC transporter
Sugar binding protein of ABC transporter {ECO:0000313|EMBL:AIY87849.1}; TaxID=1157947 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga sp. Cell2.;"
qs_4_scaffold_375_14
Halostagnicola larsenii, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12232..12657
DNA (426bp) protein (142aa)
UpsA domain-containing protein n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0L0M7_HALJP
universal stress protein UspA
Universal stress protein UspA {ECO:0000313|EMBL:AHG02071.1}; TaxID=797299 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola larsenii
qs_4_scaffold_375_15
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12723..13544)
DNA (822bp) protein (274aa)
Xylose isomerase n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0CZB9_9EURY
Xylose isomerase {ECO:0000313|EMBL:ELZ27973.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum JCM 1484
xylose isomerase
qs_4_scaffold_375_16
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13632..14609
DNA (978bp) protein (326aa)
Monooxygenase n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0D1G1_9EURY
Monooxygenase {ECO:0000313|EMBL:ELZ27984.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum JCM 14848.;
monooxygenase
qs_4_scaffold_375_17
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14679..16154
DNA (1476bp) protein (492aa)
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=haloarchaeon 3A1_DGR RepID=T0TYZ9_9EURY
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:GAD51854.1}; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae.;" source="Halarchaeum acidiphil
methylmalonic acid semialdehyde dehydrogenase
qs_4_scaffold_375_18
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16244..17989
DNA (1746bp) protein (582aa)
Thiamine pyrophosphate protein central region n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2S1E9_HALTV
thiamine pyrophosphate protein central region
Thiamine pyrophosphate protein central region {ECO:0000313|EMBL:ADB63196.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterri
qs_4_scaffold_375_19
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18172..19344
DNA (1173bp) protein (391aa)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2S1E8_HALTV
alcohol dehydrogenase GroES
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:ADB63195.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigen
qs_4_scaffold_375_20
Natronorubrum sulfidifaciens, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19655..20818
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9W768_9EURY
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ELY45091.1}; TaxID=1230460 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum sulfidifaciens JC
acyl-CoA dehydrogenase
qs_4_scaffold_375_21
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20821..22047
DNA (1227bp) protein (409aa)
crotonobetainyl-CoA:carnitine CoA-transferase/alpha-methylacyl-CoA racemase 1 (EC:2.8.3.- 5.1.99.4)
Family 3 CoA transferase {ECO:0000313|EMBL:CAI50871.1}; EC=2.8.3.- {ECO:0000313|EMBL:CAI50871.1};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natron
Family 3 CoA transferase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ILZ8_NATPD
qs_4_scaffold_375_22
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22164..23960)
DNA (1797bp) protein (599aa)
Chromosome segregation ATPase-like protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2S0B2_HALTV
chromosome segregation ATPase-like protein
Chromosome segregation ATPase-like protein {ECO:0000313|EMBL:ADB62809.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigen
qs_4_scaffold_375_23
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(23962..24609)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2S0B1_HALTV
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB62808.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena turkmenica (strai
qs_4_scaffold_375_24
unknown

Not on your lists

comp(24940..25233)
DNA (294bp) protein (98aa)

This feature has no annotations

qs_4_scaffold_375_25

Not on your lists

25379..26338
DNA (960bp) protein (320aa)
sugar kinase (EC:2.7.1.-)
Sugar kinase, ribokinase family n=1 Tax=uncultured archaeon A07HR60 RepID=V4Y948_9ARCH
Sugar kinase, ribokinase family {ECO:0000313|EMBL:ESS11458.1}; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR60.;"
qs_4_scaffold_375_26
Halonotius sp. J07HN4, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

26900..28837
DNA (1938bp) protein (646aa)
PAS sensor histidine kinase n=1 Tax=uncultured archaeon A07HN63 RepID=V4XM85_9ARCH
PAS sensor histidine kinase {ECO:0000313|EMBL:ERH05506.1}; TaxID=1070774 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halonotius.;" source="Halonotius sp. J07HN4.;"
GAF sensor signal transduction histidine kinase
qs_4_scaffold_375_27
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

28895..29263
DNA (369bp) protein (123aa)
NifU C-terminal domain protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1Y009_NATM8
NifU C-terminal domain protein
NifU C-terminal domain protein {ECO:0000313|EMBL:CCQ35771.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolap
qs_4_scaffold_375_28
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(29883..30773)
DNA (891bp) protein (297aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] id=24646628 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="ha
2-dehydropantoate 2-reductase (EC:1.1.1.169)
Displaying 28 items

View Taxonomy