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qs_4_scaffold_1274

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Displaying items 1-30 of 35 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_4_scaffold_1274_1
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3..1415)
DNA (1413bp) protein (471aa)
Protein translocase subunit SecY n=2 Tax=Halococcus RepID=M0LTN2_9EURY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; Protein transport protein SEC61 subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=113250
secY; preprotein translocase subunit SecY
qs_4_scaffold_1274_2
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1428..2009)
DNA (582bp) protein (194aa)
50S ribosomal protein L15P n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N5F4_9EURY
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DS
ribosomal protein L15
qs_4_scaffold_1274_3
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2160..2624)
DNA (465bp) protein (155aa)
50S ribosomal protein L30P n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N5K3_9EURY
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.
50S ribosomal protein L30
qs_4_scaffold_1274_4
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2624..3316)
DNA (693bp) protein (231aa)
30S ribosomal protein S5P n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LQC1_9EURY
30S ribosomal protein S5P {ECO:0000313|EMBL:EMA35767.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 1
30S ribosomal protein S5
qs_4_scaffold_1274_5
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3313..3897)
DNA (585bp) protein (195aa)
50S ribosomal protein L18P n=1 Tax=Halobacterium sp. DL1 RepID=G4IGK3_9EURY
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
50S ribosomal protein L18P/L5E
qs_4_scaffold_1274_6
Haloferax mucosum, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3897..4424)
DNA (528bp) protein (176aa)
50S ribosomal protein L19e n=1 Tax=Haloferax mucosum ATCC BAA-1512 RepID=M0IEW5_9EURY
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475, ECO:0000313|EMBL:ELZ93984.1}; TaxID=662479 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" sourc
50S ribosomal protein L19e
qs_4_scaffold_1274_7
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4431..5519)
DNA (1089bp) protein (363aa)
50S ribosomal protein L32e n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MUR2_9EURY
50S ribosomal protein L32e {ECO:0000313|EMBL:EMA49371.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae D
50S ribosomal protein L32e
qs_4_scaffold_1274_8
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(5509..6123)
DNA (615bp) protein (205aa)
50S ribosomal protein L6P n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W687_9EURY
rpl6p; 50S ribosomal protein L6P
50S ribosomal protein L6P {ECO:0000313|EMBL:AGN02182.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp. Harcht-Bsk
qs_4_scaffold_1274_9
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6151..6543)
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=RS8_NATPD
rps8p; 30S ribosomal protein S8P
30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaoni
qs_4_scaffold_1274_10
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(6562..6747)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4VY41_9EURY
rps14P; 30S ribosomal protein S14P
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp.
qs_4_scaffold_1274_11
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(6747..7325)
DNA (579bp) protein (193aa)
50S ribosomal protein L5 n=1 Tax=Halogranum salarium B-1 RepID=J3A057_9EURY
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000313|EMBL:EJN58673.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranu
rpl5; 50S ribosomal protein L5
qs_4_scaffold_1274_12
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(7322..8173)
DNA (852bp) protein (284aa)
30S ribosomal protein S4 n=1 Tax=Haloarcula hispanica N601 RepID=V5TND6_HALHI
30S ribosomal protein S4E
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; TaxID=1592728 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sp. CBA111
qs_4_scaffold_1274_13
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(8170..8565)
DNA (396bp) protein (132aa)
50S ribosomal protein L24P n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LI22_HALJP
50S ribosomal protein L24
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica
qs_4_scaffold_1274_14
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(8565..8963)
DNA (399bp) protein (133aa)
50S ribosomal protein L14 n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1Y033_NATM8
rpl14; 50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolape
qs_4_scaffold_1274_15
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(8960..9451)
DNA (492bp) protein (164aa)
30S ribosomal protein S17P n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N7N4_9EURY
30S ribosomal protein S17P {ECO:0000313|EMBL:EMA53134.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis
30S ribosomal protein S17
qs_4_scaffold_1274_16
Haloferax sp. ATCC BAA-645, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9442..9852)
DNA (411bp) protein (137aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754, ECO:0000313|EMBL:ELZ66512.1}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_
rnp1; ribonuclease P protein component 1 (EC:3.1.26.5)
Ribonuclease P protein component 1 n=3 Tax=Haloferax RepID=M0F5N5_9EURY
qs_4_scaffold_1274_17

Not on your lists


comp(9849..10076)
DNA (228bp) protein (76aa)
LSU ribosomal protein L29P n=1 Tax=uncultured archaeon A07HB70 RepID=V4Y312_9ARCH
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
50S ribosomal protein L29
qs_4_scaffold_1274_18
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(10076..11155)
DNA (1080bp) protein (360aa)
30S ribosomal protein S3 n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MIY5_HALMO
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM
ribosomal protein S3, eukaryotic/archaeal type
qs_4_scaffold_1274_19
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(11155..11499)
DNA (345bp) protein (115aa)
50S ribosomal protein L22P n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KB47_HALAR
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004007}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;
50S ribosomal protein L22
qs_4_scaffold_1274_20
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(11639..12061)
DNA (423bp) protein (141aa)
30S ribosomal protein S19P n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N7M9_9EURY
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailande
ribosomal protein S19/S15
qs_4_scaffold_1274_21

Not on your lists


comp(12061..12822)
DNA (762bp) protein (254aa)
50S ribosomal protein L2 n=1 Tax=uncultured archaeon A07HR67 RepID=V4XWK8_9ARCH
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
rpl2; 50S ribosomal protein L2
qs_4_scaffold_1274_22
Halostagnicola sp. A56, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(12824..13075)
DNA (252bp) protein (84aa)
50S ribosomal protein L23P n=1 Tax=Halovivax asiaticus JCM 14624 RepID=M0BDP1_9EURY
50S ribosomal protein L23P {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1495067 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola sp. A56
archaeal ribosomal protein L23
qs_4_scaffold_1274_23
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(13066..13815)
DNA (750bp) protein (250aa)
50S ribosomal protein L4 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MFI0_9EURY
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM
50S ribosomal protein L4P
qs_4_scaffold_1274_24
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(13812..14807)
DNA (996bp) protein (332aa)
50S ribosomal protein L3 n=2 Tax=Haladaptatus paucihalophilus RepID=E7QZV6_9EURY
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00023038}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;
50S ribosomal protein L3
qs_4_scaffold_1274_25
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14850..15758)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MEF9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA44116.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
qs_4_scaffold_1274_26
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15978..16358
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MIN5_HALMO
Uncharacterized protein {ECO:0000313|EMBL:EMA44315.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
hypothetical protein
qs_4_scaffold_1274_27
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16351..16608
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MF17_HALMO
Uncharacterized protein {ECO:0000313|EMBL:EMA44316.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
hypothetical protein
qs_4_scaffold_1274_trna_1
unknown

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16862..16932
DNA (71bp)
transferRNA
qs_4_scaffold_1274_28
unknown

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17329..17541
DNA (213bp) protein (71aa)

This feature has no annotations

qs_4_scaffold_1274_29
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17630..19450)
DNA (1821bp) protein (607aa)
DNA mismatch repair protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MWU0_9EURY
DNA mismatch repair protein {ECO:0000313|EMBL:EMA49793.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae
DNA mismatch repair protein MutS domain-containing protein
Displaying items 1-30 of 35 in total

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