ggKbase home page

qs_5_scaffold_287

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_5_scaffold_287_trna_1
unknown

Not on your lists

comp(2..74)
DNA (73bp)
transferRNA
qs_5_scaffold_287_1
unknown

Not on your lists

comp(148..249)
DNA (102bp) protein (34aa)

This feature has no annotations

qs_5_scaffold_287_2
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(287..544)
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:EFW92761.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophil
qs_5_scaffold_287_3
unknown

Not on your lists

comp(625..1317)
DNA (693bp) protein (231aa)

This feature has no annotations

qs_5_scaffold_287_4
Haloferax larsenii, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1442..2233)
DNA (792bp) protein (264aa)
ABC-type cobalamin/Fe(III)-siderophore transport system, ATPase component n=1 Tax=Haloferax larsenii JCM 13917 RepID=M0HEF1_9EURY
ABC-type cobalamin/Fe(III)-siderophore transport system, ATPase component {ECO:0000313|EMBL:ELZ82875.1}; TaxID=1227460 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Hal
btuD; ABC-type transport system ATP-binding protein (probable substrate cobalamin)
qs_5_scaffold_287_5
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2230..3333)
DNA (1104bp) protein (368aa)
ABC-type vitamin B12 transporter, permease component BtuC n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PFG2_9EURY
btuC; ABC-type vitamin B12 transporter, permease component BtuC
ABC-type vitamin B12 transporter, permease component BtuC {ECO:0000313|EMBL:CCQ34377.1}; Cobalamin import system permease protein BtuC {ECO:0000313|EMBL:ERJ06063.1}; TaxID=1033806 species="Archaea; Eu
qs_5_scaffold_287_6
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3392..4504
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Halomicrobium katesii RepID=UPI00037EB3AB
periplasmic binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ACV48896.1}; Flags: Precursor;; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Ha
qs_5_scaffold_287_7
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4840..5118
DNA (279bp) protein (93aa)
Signal recognition particle 19 kDa protein n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0L8R1_HALJP
signal recognition particle
Signal recognition particle 19 kDa protein {ECO:0000256|HAMAP-Rule:MF_00305}; Short=SRP19 {ECO:0000256|HAMAP-Rule:MF_00305};; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacterial
qs_5_scaffold_287_8
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5115..5342
DNA (228bp) protein (76aa)
tRNA/rRNA pseudouridine synthase complex protein Gar1 n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XSD5_NATM8
gar1; tRNA/rRNA pseudouridine synthase complex protein Gar1
tRNA/rRNA pseudouridine synthase complex protein Gar1 {ECO:0000313|EMBL:CCQ37237.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" sour
qs_5_scaffold_287_9
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5419..6408
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XSA8_NATM8
hypothetical protein
DUF1119 family protein {ECO:0000313|EMBL:CCQ37238.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolapensis (s
qs_5_scaffold_287_10
Haloferax sulfurifontis, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6405..7394)
DNA (990bp) protein (330aa)
ocd1; ornithine cyclodeaminase (EC:4.3.1.12)
Ornithine cyclodeaminase n=1 Tax=Haloferax sulfurifontis ATCC BAA-897 RepID=M0ITH3_9EURY
Ornithine cyclodeaminase {ECO:0000313|EMBL:ELZ99357.1}; TaxID=662480 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sulfurifontis ATCC BAA
qs_5_scaffold_287_11
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7592..7798)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Halomicrobium katesii RepID=UPI00037CF43B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV48891.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohataei
qs_5_scaffold_287_12
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8042..9277
DNA (1236bp) protein (412aa)
Sugar phosphate permease n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MNT4_HALMO
Sugar phosphate permease {ECO:0000313|EMBL:EMA47326.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 130
sugar transporter
qs_5_scaffold_287_13
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9311..9775)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M6B4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA41241.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
hypothetical protein
qs_5_scaffold_287_14
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9835..10407
DNA (573bp) protein (191aa)
hypothetical protein id=24614673 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Uncharacterized protein {ECO:0000313|EMBL:ESP88821.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halobo
acetyltransferase
qs_5_scaffold_287_15
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10460..11437
DNA (978bp) protein (326aa)
flap endonuclease 1 (EC:3.-.-.-)
Flap endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_00614}; Short=FEN-1 {ECO:0000256|HAMAP-Rule:MF_00614};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00614};; Flap structure-specific endonuclease 1 {ECO:000025
Flap endonuclease 1 n=2 Tax=Halorhabdus tiamatea SARL4B RepID=S6CUF5_9EURY
qs_5_scaffold_287_16
unknown

Not on your lists

comp(11485..11649)
DNA (165bp) protein (55aa)

This feature has no annotations

qs_5_scaffold_287_17
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11844..11987
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J3JD37_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN57149.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
hypothetical protein
qs_5_scaffold_287_18
unknown

Not on your lists

comp(12171..12566)
DNA (396bp) protein (132aa)

This feature has no annotations

qs_5_scaffold_287_19
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12612..12860
DNA (249bp) protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:EMA44761.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
qs_5_scaffold_287_20
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12920..14128
DNA (1209bp) protein (403aa)
D-mannose isomerase (EC:5.3.1.7)
N-acylglucosamine 2-epimerase n=1 Tax=Halogranum salarium B-1 RepID=J3EVX0_9EURY
N-acylglucosamine 2-epimerase {ECO:0000313|EMBL:EJN58872.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
qs_5_scaffold_287_21
Halorubrum tebenquichense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14177..15325)
DNA (1149bp) protein (383aa)
ABC transporter n=1 Tax=Halorubrum tebenquichense DSM 14210 RepID=M0DT99_9EURY
ABC transporter {ECO:0000313|EMBL:ELZ38715.1}; TaxID=1227485 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum tebenquichense DSM 14210.;"
sugar ABC transporter ATPase
qs_5_scaffold_287_22
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15328..16230)
DNA (903bp) protein (301aa)
Carbohydrate ABC transporter membrane protein 2, cut1 family n=1 Tax=Halogranum salarium B-1 RepID=J3JF20_9EURY
Carbohydrate ABC transporter membrane protein 2, cut1 family {ECO:0000313|EMBL:EJN58874.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogr
carbohydrate ABC transporter membrane protein 2, cut1 family
qs_5_scaffold_287_23
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16227..17270)
DNA (1044bp) protein (348aa)
Sugar ABC transporter permease n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DK12_9EURY
Sugar ABC transporter permease {ECO:0000313|EMBL:ELZ35022.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pal
carbohydrate ABC transporter membrane protein 1, cut1 family
qs_5_scaffold_287_24
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17289..18608)
DNA (1320bp) protein (440aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DJQ7_9EURY
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ELZ35023.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Ha
sugar ABC transporter substrate-binding protein
qs_5_scaffold_287_25
Natronolimnobius innermongolicus, Natronolimnobius, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18785..19732
DNA (948bp) protein (316aa)
Ribokinase n=1 Tax=Natronolimnobius innermongolicus JCM 12255 RepID=L9WY00_9EURY
Ribokinase {ECO:0000313|EMBL:ELY54036.1}; TaxID=1227499 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronolimnobius.;" source="Natronolimnobius innermongolicus JCM 122
sugar kinase, ribokinase
qs_5_scaffold_287_26
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19796..20746
DNA (951bp) protein (317aa)
PfkB domain protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QSN9_9EURY
PfkB domain protein {ECO:0000313|EMBL:EFW92448.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophilus D
PfkB domain-containing protein
qs_5_scaffold_287_27
Haloferax mucosum, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20794..20994)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Haloferax mucosum ATCC BAA-1512 RepID=M0IF91_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ94119.1}; TaxID=662479 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax mucosum ATCC BAA-1512.;
hypothetical protein
qs_5_scaffold_287_28
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20994..22172)
DNA (1179bp) protein (393aa)
Carbohydrate ABC transporter ATP-binding protein, cut1 family n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DJC6_9EURY
Carbohydrate ABC transporter ATP-binding protein, cut1 family {ECO:0000313|EMBL:ELZ34822.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum
carbohydrate ABC transporter ATP-binding protein, cut1 family rbh
qs_5_scaffold_287_29
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22177..23145)
DNA (969bp) protein (323aa)
Carbohydrate ABC transporter membrane protein 2, cut1 family n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N9A1_9EURY
Carbohydrate ABC transporter membrane protein 2, cut1 family {ECO:0000313|EMBL:EMA53684.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;
tsgC3; sugar ABC transporter permease
Displaying items 1-30 of 46 in total

View Taxonomy