ggKbase home page

qs_6_scaffold_998

Search features with annotation key words

Displaying items 1-30 of 34 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_6_scaffold_998_1

Not on your lists

comp(152..358)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=uncultured archaeon A07HB70 RepID=V4Y1B7_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:ESS06396.1}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
qs_6_scaffold_998_trna_1
unknown

Not on your lists

711..796
DNA (86bp)
transferRNA
qs_6_scaffold_998_2
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


874..1395
DNA (522bp) protein (174aa)
30S ribosomal protein S13 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MSK5_9EURY
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharoly
30S ribosomal protein S13
qs_6_scaffold_998_3
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


1395..1922
DNA (528bp) protein (176aa)
30S ribosomal protein S4 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MP59_9EURY
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;"
rps4p; 30S ribosomal protein S4P
qs_6_scaffold_998_4
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


1864..2325
DNA (462bp) protein (154aa)
30S ribosomal protein S11 n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QSE7_9EURY
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus pauciha
30S ribosomal protein S14e (S11p)
qs_6_scaffold_998_5
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2328..3098
DNA (771bp) protein (257aa)
DNA-directed RNA polymerase subunit D {ECO:0000256|HAMAP-Rule:MF_00320}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00320};; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
DNA-directed RNA polymerase subunit D n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MQ17_9EURY
DNA-directed RNA polymerase, alpha subunit/40 kD subunit
qs_6_scaffold_998_trna_2
unknown

Not on your lists

3246..3330
DNA (85bp)
transferRNA
qs_6_scaffold_998_6
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


3507..3857
DNA (351bp) protein (117aa)
50S ribosomal protein L18e n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N4V0_9EURY
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329, ECO:0000256|RuleBase:RU000573}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.
50S ribosomal protein L18
qs_6_scaffold_998_7
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


3854..4297
DNA (444bp) protein (148aa)
50S ribosomal protein L13 n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0L322_9EURY
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.;
ribosomal protein L13, archaeal/eukaryotic
qs_6_scaffold_998_8
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


4291..4686
DNA (396bp) protein (132aa)
30S ribosomal protein S9 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MP64_9EURY
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003817}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;"
rps9p; 30S ribosomal protein S9
qs_6_scaffold_998_9
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


4809..5003
DNA (195bp) protein (65aa)
DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250, ECO:0000313|EMBL:KDS91409.1}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250};; TaxID=2248 species="Archaea; Euryarchaeota; Halobac
DNA-directed RNA polymerase subunit N n=1 Tax=haloarchaeon 3A1_DGR RepID=T0SRX6_9EURY
DNA-directed RNA polymerase subunit N
qs_6_scaffold_998_10
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5000..5218
DNA (219bp) protein (73aa)
DNA-directed RNA polymerase subunit K {ECO:0000256|HAMAP-Rule:MF_00192}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00192};; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
DNA-directed RNA polymerase subunit K n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4HNG4_9EURY
DNA-directed RNA polymerase subunit K/omega
qs_6_scaffold_998_11
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5190..6422
DNA (1233bp) protein (411aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N4U4_9EURY
qs_6_scaffold_998_12
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


6453..7313
DNA (861bp) protein (287aa)
30S ribosomal protein S2 n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D6C5_HALXS
30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000256|SAAS:SAAS00012212}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.;" source=
qs_6_scaffold_998_13

Not on your lists

comp(7388..8260)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=halophilic archaeon DL31 RepID=G2MQ54_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN07823.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
qs_6_scaffold_998_14
unknown

Not on your lists

8551..8844
DNA (294bp) protein (98aa)

This feature has no annotations

qs_6_scaffold_998_15
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8898..9830
DNA (933bp) protein (311aa)
Mevalonate kinase {ECO:0000256|HAMAP-Rule:MF_00217}; Short=MK {ECO:0000256|HAMAP-Rule:MF_00217};; Short=MVK {ECO:0000256|HAMAP-Rule:MF_00217};; EC=2.7.1.36 {ECO:0000256|HAMAP-Rule:MF_00217};; TaxID=12
Mevalonate kinase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MX81_9EURY
mevalonate kinase
qs_6_scaffold_998_16
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9913..10707
DNA (795bp) protein (265aa)
Isopentenyl phosphate kinase {ECO:0000256|PIRNR:PIRNR016496}; Short=IPK {ECO:0000256|PIRNR:PIRNR016496};; EC=2.7.4.26 {ECO:0000256|PIRNR:PIRNR016496};; TaxID=1132509 species="Archaea; Euryarchaeota; H
Isopentenyl phosphate kinase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LW79_9EURY
putative archaeal kinase
qs_6_scaffold_998_17
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10775..11089
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) RepID=Q18DE2_HALWD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ51125.1}; TaxID=362976 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi (strain
qs_6_scaffold_998_18
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11290..12636
DNA (1347bp) protein (449aa)
Ribonuclease J {ECO:0000256|HAMAP-Rule:MF_01492}; Short=RNase J {ECO:0000256|HAMAP-Rule:MF_01492};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01492};; TaxID=797114 species="Archaea; Euryarchaeota; Halobac
Beta-lactamase domain protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CT69_9EURY
putative hydrolase of the metallo-beta-lactamase superfamily
qs_6_scaffold_998_19
Natronorubrum sulfidifaciens, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12731..13843
DNA (1113bp) protein (371aa)
dimethylallyltranstransferase (EC:2.5.1.1)
Dimethylallyltranstransferase n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9WG04_9EURY
Dimethylallyltranstransferase {ECO:0000313|EMBL:ELY48206.1}; TaxID=1230460 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum sulfidifac
qs_6_scaffold_998_20
Haloferax prahovense, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13876..14157
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Haloferax prahovense DSM 18310 RepID=M0G2I2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ65767.1}; TaxID=1227461 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax prahovense DSM 18310.;
hypothetical protein
qs_6_scaffold_998_21
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14376..16211
DNA (1836bp) protein (612aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00016154}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00088701};; Glutamyl-tRNA synthetase {ECO:00
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0M8Q3_HALMO
qs_6_scaffold_998_22
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16271..17521)
DNA (1251bp) protein (417aa)
HTR-like protein n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KR59_HALAR
HTR-like protein {ECO:0000313|EMBL:EMA23716.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DSM 12282
htlD; HTR-like protein
qs_6_scaffold_998_23
unknown

Not on your lists

17673..18323
DNA (651bp) protein (217aa)

This feature has no annotations

qs_6_scaffold_998_24
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18722..20194)
DNA (1473bp) protein (491aa)
Cytochrome P450 n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XS85_NATM8
cyc2; cytochrome P450
Cytochrome P450 {ECO:0000313|EMBL:CCQ37157.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolapensis (strain D
qs_6_scaffold_998_25
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20547..20876
DNA (330bp) protein (110aa)
Ferredoxin n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N7H9_9EURY
Zinc-containing ferredoxin {ECO:0000256|PIRNR:PIRNR000068}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae
ferredoxin
qs_6_scaffold_998_26
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21210..22079
DNA (870bp) protein (290aa)
Electron transfer flavoprotein subunit beta n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N438_9EURY
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:EMA52626.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococ
electron transfer flavoprotein subunit beta
qs_6_scaffold_998_27
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22082..24097
DNA (2016bp) protein (672aa)
Electron transfer flavoprotein subunit alpha n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N3X1_9EURY
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:EMA52627.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Haloco
etfA1; electron transfer flavoprotein subunit alpha
qs_6_scaffold_998_28
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24097..25764
DNA (1668bp) protein (556aa)
Flavoprotein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J6B5_HALJB
flavoprotein
Flavoprotein {ECO:0000313|EMBL:ADJ15833.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotgali (strain D
Displaying items 1-30 of 34 in total

View Taxonomy