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rifcsphigho2_01_scaffold_5564

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_5564_1
AR10, Diapherotrites, DPANN, Archaea

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1..252
-----------------
DNA (252bp)
protein (84aa)
hypothetical protein
Winged helix-turn-helix transcription repressor DNA-binding id=5241317 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Winged helix-turn-helix transcription repressor DNA-binding Tax=AR10
rifcsphigho2_01_scaffold_5564_2
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

265..1047
-----------------
DNA (783bp)
protein (261aa)
FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein id=5241318 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein Tax=AR10
Fe-S cluster assembly ATP-binding protein rbh
rifcsphigho2_01_scaffold_5564_3
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

1047..2483
-----------------
DNA (1437bp)
protein (479aa)
Fe-S cluster assembly protein SufB
Iron-regulated ABC transporter membrane component SufB; K09014 Fe-S cluster assembly protein SufB id=5241319 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
Iron-regulated ABC transporter membrane component SufB; K09014 Fe-S cluster assembly protein SufB Tax=AR10
rifcsphigho2_01_scaffold_5564_4
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

2507..3706
-----------------
DNA (1200bp)
protein (400aa)
Fe-S cluster assembly protein SufD
Fe-S cluster assembly protein; K09015 Fe-S cluster assembly protein SufD id=5241320 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
Fe-S cluster assembly protein; K09015 Fe-S cluster assembly protein SufD Tax=AR10
rifcsphigho2_01_scaffold_5564_5

Not on your lists

3699..5273
-----------------
DNA (1575bp)
protein (525aa)
cysteine desulfurase / selenocysteine lyase (EC:2.8.1.7)
SufS subfamily cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] id=5241321 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
Cysteine desulfurase / selenocysteine lyase {ECO:0000313|EMBL:AJF60312.1}; EC=2.8.1.7 {ECO:0000313|EMBL:AJF60312.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5564_6

Not on your lists

5378..6544
-----------------
DNA (1167bp)
protein (389aa)
geranylgeranyl reductase
geranylgeranyl reductase id=5241323 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
Geranylgeranyl reductase {ECO:0000313|EMBL:AJF60314.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5564_7
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(6546..7172)
-----------------
DNA (627bp)
protein (209aa)
thiamine biosynthesis protein ThiI
thiamine biosynthesis/tRNA modification protein ThiI; K03151 thiamine biosynthesis protein ThiI id=5241324 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
thiamine biosynthesis/tRNA modification protein ThiI; K03151 thiamine biosynthesis protein ThiI Tax=AR10
rifcsphigho2_01_scaffold_5564_8
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

7285..7593
-----------------
DNA (309bp)
protein (103aa)
dioxygenase, ferredoxin subunit
dioxygenase, ferredoxin subunit id=5241325 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
dioxygenase, ferredoxin subunit Tax=AR10
rifcsphigho2_01_scaffold_5564_9
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

7633..8349
-----------------
DNA (717bp)
protein (239aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31)
undecaprenyl diphosphate synthase; K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] id=5241326 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
undecaprenyl diphosphate synthase; K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=AR10
rifcsphigho2_01_scaffold_5564_10

Not on your lists

comp(8393..9028)
-----------------
DNA (636bp)
protein (212aa)
N-glycosylase/DNA lyase (EC:4.2.99.18 3.2.2.-) rbh
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] id=5241327 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
Probable N-glycosylase/DNA lyase {ECO:0000256|HAMAP-Rule:MF_00241}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5564_11
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(9028..9438)
-----------------
DNA (411bp)
protein (137aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9 2.5.1.78)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] id=5241328 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=AR10
rifcsphigho2_01_scaffold_5564_12
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(9472..9945)
-----------------
DNA (474bp)
protein (158aa)
ribC; riboflavin synthase (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] id=5241329 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
ribC; riboflavin synthase (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=AR10
ribC; riboflavin synthase (EC:2.5.1.9)
rifcsphigho2_01_scaffold_5564_13
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(9942..10688)
-----------------
DNA (747bp)
protein (249aa)
riboflavin kinase, archaea type (EC:2.7.1.161)
riboflavin/FAD biosynthesis transcriptional regulator (EC:2.7.1.161); K07732 riboflavin kinase, archaea type [EC:2.7.1.161] id=5241330 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
riboflavin/FAD biosynthesis transcriptional regulator (EC:2.7.1.161); K07732 riboflavin kinase, archaea type [EC:2.7.1.161] Tax=AR10
rifcsphigho2_01_scaffold_5564_14
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(10837..11838)
-----------------
DNA (1002bp)
protein (334aa)
mechanosensitive ion channel protein MscS; K16052 MscS family membrane protein YnaI id=5241331 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
mechanosensitive ion channel protein MscS; K16052 MscS family membrane protein YnaI Tax=AR10
MscS family membrane protein YnaI
rifcsphigho2_01_scaffold_5564_15
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

12191..12424
-----------------
DNA (234bp)
protein (78aa)
rpoH; DNA-directed RNA polymerase subunit H (EC:2.7.7.6)
rpoH; DNA-directed RNA polymerase subunit H; K03053 DNA-directed RNA polymerase subunit H [EC:2.7.7.6] id=5241332 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rpoH; DNA-directed RNA polymerase subunit H; K03053 DNA-directed RNA polymerase subunit H [EC:2.7.7.6] Tax=AR10
rifcsphigho2_01_scaffold_5564_16

Not on your lists

12433..13896
-----------------
DNA (1464bp)
protein (488aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] id=5241333 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
DNA-directed RNA polymerase subunit B {ECO:0000313|EMBL:AJF60324.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AJF60324.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5564_17
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

13893..13991
-----------------
DNA (99bp)
protein (33aa)
hypothetical protein
id=5241334 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
rifcsphigho2_01_scaffold_5564_18
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

13997..15814
-----------------
DNA (1818bp)
protein (606aa)
DNA-directed RNA polymerase, subunit b' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] Tax=AR10
DNA-directed RNA polymerase, subunit b' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] id=5241335 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
DNA-directed RNA polymerase subunit B' (EC:2.7.7.6)
rifcsphigho2_01_scaffold_5564_19

Not on your lists

15818..18436
-----------------
DNA (2619bp)
protein (873aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
DNA-directed RNA polymerase subunit A'; K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] id=5241336 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
DNA-directed RNA polymerase subunit A' (EC:2.7.7.6)
rifcsphigho2_01_scaffold_5564_20
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

18433..19758
-----------------
DNA (1326bp)
protein (442aa)
rpoA2; DNA-directed RNA polymerase subunit A' (EC:2.7.7.6)
rpoA2; DNA-directed RNA polymerase, subunit A'' (EC:2.7.7.6); K03042 DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] id=5241337 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
rpoA2; DNA-directed RNA polymerase, subunit A'' (EC:2.7.7.6); K03042 DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] Tax=AR10
rifcsphigho2_01_scaffold_5564_21
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

19769..20092
-----------------
DNA (324bp)
protein (108aa)
large subunit ribosomal protein L30e
LSU ribosomal protein l30e; K02908 large subunit ribosomal protein L30e id=5241338 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
LSU ribosomal protein l30e; K02908 large subunit ribosomal protein L30e Tax=AR10
rifcsphigho2_01_scaffold_5564_22
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

20089..20502
-----------------
DNA (414bp)
protein (138aa)
nusA; N utilization substance protein A
nusA; transcription elongation factor NusA-like protein; K02600 N utilization substance protein A id=5241339 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
nusA; transcription elongation factor NusA-like protein; K02600 N utilization substance protein A Tax=AR10
rifcsphigho2_01_scaffold_5564_23
AR10, Diapherotrites, DPANN, Archaea

Not on your lists


20535..20963
-----------------
DNA (429bp)
protein (143aa)
30S ribosomal protein S12, small subunit ribosomal protein S12
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 id=5241340 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=AR10
rifcsphigho2_01_scaffold_5564_24
AR10, Diapherotrites, DPANN, Archaea

Not on your lists


20994..21593
-----------------
DNA (600bp)
protein (200aa)
small subunit ribosomal protein S7
30S ribosomal protein S5e (S7p); K02992 small subunit ribosomal protein S7 id=5241341 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
30S ribosomal protein S5e (S7p); K02992 small subunit ribosomal protein S7 Tax=AR10
rifcsphigho2_01_scaffold_5564_25

Not on your lists

21628..23823
-----------------
DNA (2196bp)
protein (732aa)
Elongation factor 2 {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000256|SAAS:SAAS00088569}; Short=EF-2 {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
fusA; elongation factor EF-2; K03234 elongation factor 2 id=5241342 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10 rbh
fusA; elongation factor 2
rifcsphigho2_01_scaffold_5564_26
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

23965..24798
-----------------
DNA (834bp)
protein (278aa)
elongation factor 1-alpha (EC:2.7.7.4)
elongation factor 1-alpha (EC:2.7.7.4); K03231 elongation factor 1-alpha id=5241343 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
elongation factor 1-alpha (EC:2.7.7.4); K03231 elongation factor 1-alpha Tax=AR10
Displaying 26 items

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