ggKbase home page

rifcsphigho2_01_scaffold_29333

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_29333_1
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(24..170)
-----------------
DNA (147bp)
protein (49aa)
coiled-coil Tax=AR10
rifcsphigho2_01_scaffold_29333_2

Not on your lists

314..634
-----------------
DNA (321bp)
protein (107aa)
transcriptional regulator PadR family transcriptional regulator
transcriptional regulator PadR family transcriptional regulator id=5241742 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Transcriptional regulator PadR family transcriptional regulator {ECO:0000313|EMBL:AJF60733.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_29333_3
R_OP11_Daviesbacteria_44_29, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

650..1258
-----------------
DNA (609bp)
protein (203aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Daviesbacteria_44_29_curated
hypothetical protein id=5084327 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
hypothetical protein
rifcsphigho2_01_scaffold_29333_4
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

1348..5103
-----------------
DNA (3756bp)
protein (1252aa)
Putative molybdenum cofactor biosynthesis protein C n=1 Tax=Lactobacillus oris F0423 RepID=F9JFG6_9LACO
KP-43 peptidase Tax=CG_Micra_06
putative membrane-anchored cell surface protein
rifcsphigho2_01_scaffold_29333_5
unknown

Not on your lists

comp(5059..5430)
-----------------
DNA (372bp)
protein (124aa)

This feature has no annotations

rifcsphigho2_01_scaffold_29333_6
BJP_IG2103_Methanoregula_55_19, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5439..6014)
-----------------
DNA (576bp)
protein (192aa)
uvrC; excinuclease ABC, C subunit (EC:3.1.25.-)
Excinuclease ABC, C subunit n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CXQ7_9ARCH
Tax=BJP_IG2103_Methanoregula_55_19
rifcsphigho2_01_scaffold_29333_7

Not on your lists

comp(5965..7083)
-----------------
DNA (1119bp)
protein (373aa)
Excinuclease ABC subunit C n=1 Tax=uncultured archaeon GZfos17F1 RepID=Q64DT7_9ARCH
Excinuclease ABC subunit C {ECO:0000313|EMBL:AAU82440.1}; TaxID=285395 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos17F1.;"
uvrC; excinuclease ABC subunit C
rifcsphigho2_01_scaffold_29333_8
Methanoplanus limicola, Methanoplanus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7188..10115)
-----------------
DNA (2928bp)
protein (976aa)
UvrABC system protein A n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1YYA8_9EURY
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=937775 species="Ar
excinuclease ABC subunit A
rifcsphigho2_01_scaffold_29333_9
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

comp(10131..12176)
-----------------
DNA (2046bp)
protein (682aa)
UvrABC system protein B n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WNE4_METH6
uvrB; excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=GWA2_WOR_2_47_8_curated
UvrABC system protein B
rifcsphigho2_01_scaffold_29333_10
GWF2_Elusimicrobia_62_30_curated, Elusimicrobia, Bacteria

Not on your lists

comp(12377..13060)
-----------------
DNA (684bp)
protein (228aa)
NADP oxidoreductase, coenzyme F420-dependent n=1 Tax=Arthrobacter sp. (strain FB24) RepID=A0JSJ2_ARTS2
NADP oxidoreductase, coenzyme F420-dependent; K06988 Tax=GWF2_Elusimicrobia_62_30_curated
NADP oxidoreductase, coenzyme F420-dependent
rifcsphigho2_01_scaffold_29333_11
unknown

Not on your lists

13137..13235
-----------------
DNA (99bp)
protein (33aa)

This feature has no annotations

rifcsphigho2_01_scaffold_29333_12
GWA2_OD1_45_13, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(13267..13809)
-----------------
DNA (543bp)
protein (181aa)
Sulfurtransferase Tax=GWA2_OD1_45_13
Sulfurtransferase id=2823222 bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan
rifcsphigho2_01_scaffold_29333_13
DS1215_Thermoanaerobacter_34_5835, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14004..14492)
-----------------
DNA (489bp)
protein (163aa)
Ferritin, Dps family protein n=6 Tax=Thermoanaerobacter RepID=B0K5T1_THEPX
Ferritin Dps family protein
Ferritin Dps family protein; K03594 bacterioferritin Tax=DS1215_Thermoanaerobacter_34_5835
rifcsphigho2_01_scaffold_29333_14
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(14621..14953)
-----------------
DNA (333bp)
protein (111aa)
Putative endoribonuclease L-PSP n=2 Tax=environmental samples RepID=R5ML62_9BACE
hypothetical protein; K07567 TdcF protein Tax=RBG_13_Woesearchaeota_36_6_curated
endoribonuclease L-PSP
rifcsphigho2_01_scaffold_29333_15
R_RIF_OD1_01_48_11, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(15143..15874)
-----------------
DNA (732bp)
protein (244aa)
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0THJ1_PARBH
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_01_48_11_curated
rifcsphigho2_01_scaffold_29333_16
unknown

Not on your lists

comp(16058..16264)
-----------------
DNA (207bp)
protein (69aa)

This feature has no annotations

rifcsphigho2_01_scaffold_29333_17
GWA2_OD1_45_13, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(16375..17322)
-----------------
DNA (948bp)
protein (316aa)
Putative uncharacterized protein Tax=GWA2_OD1_45_13
FIC protein
FICD; FIC domain containing id=5240973 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_29333_18
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

17750..18061
-----------------
DNA (312bp)
protein (104aa)
Glycosyltransferase n=1 Tax=uncultured bacterium RepID=K2DRV1_9BACT
Glycosyl transferase group 1 {ECO:0000313|EMBL:KKS17888.1}; TaxID=1618904 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
Displaying 18 items

View Taxonomy