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rifcsphigho2_01_scaffold_6177

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_6177_1
AR9, Woesearchaeaota, DPANN, Archaea

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comp(3..635)
-----------------
DNA (633bp)
protein (211aa)
ef1a, tuf; elongation factor 1-alpha (EC:3.6.5.3); K03231 elongation factor 1-alpha Tax=AR9
translation elongation factor 1a (ef-1a/ef-tu) (EC:2.7.7.4); K03231 elongation factor 1-alpha id=5043959 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Elongation factor 1-alpha
rifcsphigho2_01_scaffold_6177_2
RifOxyA12_full_Deltaproteobacteria_61_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

849..1505
-----------------
DNA (657bp)
protein (219aa)
Fe-S protein, radical SAM family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMY3_KORVE
radical SAM protein Tax=RifOxyA12_full_Deltaproteobacteria_61_11_curated
metallo cofactor biosynthesis protein
rifcsphigho2_01_scaffold_6177_3
unknown

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1685..1870
-----------------
DNA (186bp)
protein (62aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6177_4
unknown

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comp(1893..2240)
-----------------
DNA (348bp)
protein (116aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6177_5
unknown

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comp(2354..2641)
-----------------
DNA (288bp)
protein (96aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6177_6

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comp(2707..4908)
-----------------
DNA (2202bp)
protein (734aa)
Elongation factor 2 {ECO:0000256|SAAS:SAAS00088569}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
fusA; elongation factor EF-2; K03234 elongation factor 2 id=5045787 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Elongation factor 2
rifcsphigho2_01_scaffold_6177_7
R_RIF_OD1_12_48_27, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(5089..5577)
-----------------
DNA (489bp)
protein (163aa)
ndk2; putative nucleoside diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_12_48_27_curated
nucleoside-diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] id=5045753 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
nucleoside diphosphate kinase
rifcsphigho2_01_scaffold_6177_8
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(5574..5801)
-----------------
DNA (228bp)
protein (76aa)
50S ribosomal protein L24e n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RL24E_METKA
50S ribosomal protein L24; K02896 large subunit ribosomal protein L24e Tax=RBG_13_Woesearchaeota_36_6_curated
RPL24A; 50S ribosomal protein L24
rifcsphigho2_01_scaffold_6177_9
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(5807..6115)
-----------------
DNA (309bp)
protein (103aa)
rps28e; 30S ribosomal protein S28; K02979 small subunit ribosomal protein S28e Tax=AR9
rps28e; 30S ribosomal protein S28e; K02979 small subunit ribosomal protein S28e id=5043962 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S28e
rifcsphigho2_01_scaffold_6177_10
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(6134..6454)
-----------------
DNA (321bp)
protein (107aa)
rpl7ae; 50S ribosomal protein L7; K02936 large subunit ribosomal protein L7Ae Tax=AR9
50S ribosomal protein L7Ae id=5800777 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L7Ae
rifcsphigho2_01_scaffold_6177_11
Thermococcus barophilus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

6713..6886
-----------------
DNA (174bp)
protein (58aa)
Uncharacterized protein {ECO:0000313|EMBL:ADT83606.1}; TaxID=391623 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus barophilus (stra
rifcsphigho2_01_scaffold_6177_12
unknown

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7423..8448
-----------------
DNA (1026bp)
protein (342aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6177_13
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

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8642..10327
-----------------
DNA (1686bp)
protein (562aa)
serine/threonine kinase (EC:2.7.11.1)
Serine/threonine kinase {ECO:0000313|EMBL:BAC88363.1}; EC=2.7.11.1 {ECO:0000313|EMBL:BAC88363.1};; TaxID=251221 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source=
Serine/threonine kinase n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NNI9_GLOVI
rifcsphigho2_01_scaffold_6177_14
Chroococcales cyanobacterium CENA595, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

10380..12893
-----------------
DNA (2514bp)
protein (838aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI0002EA384D
Uncharacterized protein {ECO:0000313|EMBL:KJH73647.1}; TaxID=1618023 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales.;" source="Chroococcales cyanobacterium CENA595.;"
serine/threonine protein kinase
rifcsphigho2_01_scaffold_6177_15
unknown

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comp(12901..13080)
-----------------
DNA (180bp)
protein (60aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6177_16

Not on your lists

13194..13409
-----------------
DNA (216bp)
protein (72aa)
hypothetical protein
Transcription regulator AbrB/SpoV, predicted id=5241129 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60120.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_6177_17
Thermococcus sp. AM4, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

13406..13774
-----------------
DNA (369bp)
protein (123aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003705994
PIN domain-containing protein
Putative PIN domain protein {ECO:0000313|EMBL:EEB73005.1}; TaxID=246969 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus sp. AM4.;"
rifcsphigho2_01_scaffold_6177_18
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(13814..14233)
-----------------
DNA (420bp)
protein (140aa)
ribosomal protein S6e; K02991 small subunit ribosomal protein S6e Tax=AR11
SSU ribosomal protein S6E id=5799714 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S6e
rifcsphigho2_01_scaffold_6177_19
RLO_PLX_64_10, Bacteria

Not on your lists

comp(14363..15523)
-----------------
DNA (1161bp)
protein (387aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000363CD17
tolB; TolB protein; K03641 TolB protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
rifcsphigho2_01_scaffold_6177_20
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(15773..16912)
-----------------
DNA (1140bp)
protein (380aa)
Tax=BJP_IG2157_Anaerolineales_55_23
rifcsphigho2_01_scaffold_6177_21
unknown

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comp(16967..18277)
-----------------
DNA (1311bp)
protein (437aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6177_22
unknown

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comp(18458..18652)
-----------------
DNA (195bp)
protein (65aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6177_23

Not on your lists

18737..19087
-----------------
DNA (351bp)
protein (117aa)
Marine sediment metagenome DNA, contig: S01H1_S23626 {ECO:0000313|EMBL:GAG22180.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsphigho2_01_scaffold_6177_24
GWB1_OP11_44_6, Collierbacteria, Microgenomates, Bacteria

Not on your lists

19279..19548
-----------------
DNA (270bp)
protein (90aa)
Regulators of stationary/sporulation gene expression n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8RAW9_THETN
Transcription regulator, SpoVT/AbrB family {ECO:0000313|EMBL:KKT71667.1}; TaxID=1618384 species="Bacteria; Microgenomates.;" source="Microgenomates (Collierbacteria) bacterium GW2011_GWB1_44_6.;"
AbrB; regulators of stationary/sporulation gene expression
rifcsphigho2_01_scaffold_6177_25
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

19574..19840
-----------------
DNA (267bp)
protein (89aa)
CopG family transcripitonal regulator n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000364B2FD
CopG family transcripitonal regulator Tax=CG_Woesearch_02
rifcsphigho2_01_scaffold_6177_26
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(19832..20251)
-----------------
DNA (420bp)
protein (140aa)
hypothetical protein
id=5045845 Tax=CG_Woesearch_02
id=5045845 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_01_scaffold_6177_27
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(20304..21167)
-----------------
DNA (864bp)
protein (288aa)
hypothetical protein Tax=RBG_13_Pacearchaeota_33_26_curated
rifcsphigho2_01_scaffold_6177_28
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21247..23034)
-----------------
DNA (1788bp)
protein (596aa)
Protein containing FG-GAP repeats n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0M5D7_GRAFK
Uncharacterized protein {ECO:0000313|EMBL:KJS05253.1}; Flags: Fragment;; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.
hypothetical protein
rifcsphigho2_01_scaffold_6177_29
R_RIF_OD1_06_34_9, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(23064..24203)
-----------------
DNA (1140bp)
protein (380aa)
cell surface receptor IPT/TIG domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_34_9_curated
rifcsphigho2_01_scaffold_6177_30
Cyanothece sp. PCC 7822, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(24205..26019)
-----------------
DNA (1815bp)
protein (605aa)
Outer membrane adhesin like proteiin n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0UNA2_CYAP2
outer membrane adhesin-like protein
Outer membrane adhesin like proteiin {ECO:0000313|EMBL:ADN18432.1}; TaxID=497965 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PC
Displaying 30 items

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