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rifcsphigho2_01_scaffold_2608

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_2608_1
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(1..252)
-----------------
DNA (252bp)
protein (84aa)
Cell surface protein {ECO:0000313|EMBL:AKB23644.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp.
PKD domain containing protein id=3783307 bin=GWF2_OP3_43_52 species=Methanosphaerula palustris genus=Methanosphaerula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Ig family protein
rifcsphigho2_01_scaffold_2608_2
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(305..3058)
-----------------
DNA (2754bp)
protein (918aa)
Putative flagellar system-associated repeat protein n=1 Tax=Bacteriovorax sp. Seq25_V RepID=T0R518_9DELT
hemagglutinin/hemolysin-like protein
VCBS repeat-containing protein {ECO:0000313|EMBL:AFD05208.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;"
rifcsphigho2_01_scaffold_2608_3
unknown

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comp(3125..4294)
-----------------
DNA (1170bp)
protein (390aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2608_4
unknown

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comp(4361..6346)
-----------------
DNA (1986bp)
protein (662aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2608_5
R_RIF_OD1_03_45_10, RIF-OD1-3, Parcubacteria, Bacteria

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comp(6496..7719)
-----------------
DNA (1224bp)
protein (408aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036C5CBD
amino acid permease Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_03_45_10_curated
amino acid permease
rifcsphigho2_01_scaffold_2608_6
AR9, Woesearchaeaota, DPANN, Archaea

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7853..9112
-----------------
DNA (1260bp)
protein (420aa)
Tax=AR9
rifcsphigho2_01_scaffold_2608_7
unknown

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9584..10135
-----------------
DNA (552bp)
protein (184aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2608_8
CG_Woesearch_01, Woesearchaeota, Archaea

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10369..11469
-----------------
DNA (1101bp)
protein (367aa)
RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4); K01974 RNA 3'-terminal phosphate cyclase [EC:6.5.1.4] Tax=CG_Woesearch_01
RNA 3'-terminal phosphate cyclase id=5800817 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
RNA 3'-terminal-phosphate cyclase
rifcsphigho2_01_scaffold_2608_9
R_OD1_Falkowbacteria_39_17, Falkowbacteria, Parcubacteria, Bacteria

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11665..11943
-----------------
DNA (279bp)
protein (93aa)
Elongation factor 1-beta id=5799999 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_39_17_curated
rifcsphigho2_01_scaffold_2608_10
unknown

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12074..12451
-----------------
DNA (378bp)
protein (126aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2608_11

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comp(12478..13200)
-----------------
DNA (723bp)
protein (241aa)
tRNA (Guanine26-N2/guanine27-N2)-dimethyltransferase {ECO:0000313|EMBL:KHO49623.1}; EC=2.1.1.215 {ECO:0000313|EMBL:KHO49623.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase id=5800001 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
trm1; N(2),N(2)-dimethylguanosine tRNA methyltransferase
rifcsphigho2_01_scaffold_2608_12
GWA2_OD1_42_32, Magasanikbacteria, Parcubacteria, Bacteria

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comp(13314..14342)
-----------------
DNA (1029bp)
protein (343aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS57595.1}; TaxID=1619039 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Magasanikbacteria) bacterium GW2011_GWA2_42_32.;"
rifcsphigho2_01_scaffold_2608_13
unknown

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comp(14464..15147)
-----------------
DNA (684bp)
protein (228aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2608_14
unknown

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comp(15255..15431)
-----------------
DNA (177bp)
protein (59aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2608_15

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comp(15463..16578)
-----------------
DNA (1116bp)
protein (372aa)
tRNA (Guanine26-N2/guanine27-N2)-dimethyltransferase {ECO:0000313|EMBL:KHO49623.1}; EC=2.1.1.215 {ECO:0000313|EMBL:KHO49623.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase id=5800001 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
trm1; N(2),N(2)-dimethylguanosine tRNA methyltransferase
rifcsphigho2_01_scaffold_2608_16
unknown

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16637..16885
-----------------
DNA (249bp)
protein (83aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2608_17

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comp(17057..17629)
-----------------
DNA (573bp)
protein (191aa)
hypothetical protein id=19819 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE04463.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rifcsphigho2_01_scaffold_2608_18
unknown

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comp(17731..18192)
-----------------
DNA (462bp)
protein (154aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2608_19
unknown

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comp(18279..19133)
-----------------
DNA (855bp)
protein (285aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2608_20
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19219..19986)
-----------------
DNA (768bp)
protein (256aa)
DNA alkylation repair protein {ECO:0000313|EMBL:KHD03689.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Th
DNA alkylation repair enzyme superfamily id=5094342 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
DNA alkylation repair enzyme
rifcsphigho2_01_scaffold_2608_21
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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20039..20770
-----------------
DNA (732bp)
protein (244aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00037F47A1
hypothetical protein; K07043 Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsphigho2_01_scaffold_2608_22

Not on your lists

20941..21861
-----------------
DNA (921bp)
protein (307aa)
preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=5048448 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
preprotein translocase subunit SecF
rifcsphigho2_01_scaffold_2608_23

Not on your lists

21947..23533
-----------------
DNA (1587bp)
protein (529aa)
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD id=5048449 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Preprotein translocase subunit SecD {ECO:0000313|EMBL:KHO45483.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
SecD/SecF/SecDF export membrane protein
rifcsphigho2_01_scaffold_2608_24
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

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23572..23727
-----------------
DNA (156bp)
protein (52aa)
Export-related chaperone CsaA n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EBC0_GEOBB
Export-related chaperone CsaA Tax=GWA1_Berkelbacteria_36_10
export-like chaperone CsaA
rifcsphigho2_01_scaffold_2608_25
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists

23696..23998
-----------------
DNA (303bp)
protein (101aa)
Export-related chaperone CsaA n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EYW9_EMTOG
export-related chaperone CsaA; K06878 tRNA-binding protein Tax=CG_Micra_06
export-related chaperone CsaA
rifcsphigho2_01_scaffold_2608_26
R_OD1_Falkowbacteria_39_17, Falkowbacteria, Parcubacteria, Bacteria

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comp(24180..24674)
-----------------
DNA (495bp)
protein (165aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_39_17_curated
hypothetical protein id=5042262 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_01_scaffold_2608_27
AR4, Woesearchaeaota, DPANN, Archaea

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comp(24726..25229)
-----------------
DNA (504bp)
protein (168aa)
id=5048391 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
rifcsphigho2_01_scaffold_2608_28
GWA2_OD1_47_7, Parcubacteria, Bacteria

Not on your lists

comp(25281..25994)
-----------------
DNA (714bp)
protein (238aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037AEED3
Cell division ATPase MinD, archaeal Tax=GWA2_OD1_47_7
cell division ATPase MinD
rifcsphigho2_01_scaffold_2608_29
AR9, Woesearchaeaota, DPANN, Archaea

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comp(26101..26568)
-----------------
DNA (468bp)
protein (156aa)
hypothetical protein
Uncharacterized protein Tax=AR9
id=5103666 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_01_scaffold_2608_30

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comp(26692..27057)
-----------------
DNA (366bp)
protein (122aa)
Nascent polypeptide-associated complex protein {ECO:0000256|HAMAP-Rule:MF_00814}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
Nascent polypeptide-associated complex protein id=5800198 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
alpha-NAC related protein
Displaying items 1-30 of 34 in total

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