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rifcsphigho2_01_scaffold_19503

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_19503_1

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120..2006
-----------------
DNA (1887bp)
protein (629aa)
ATP dependent helicase id=5799755 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ATP dependent helicase {ECO:0000313|EMBL:AJF61086.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
ATP dependent helicase
rifcsphigho2_01_scaffold_19503_2
AR4, Woesearchaeaota, DPANN, Archaea

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2220..2540
-----------------
DNA (321bp)
protein (107aa)
id=5041840 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
rifcsphigho2_01_scaffold_19503_3
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2659..4302)
-----------------
DNA (1644bp)
protein (548aa)
Putative membrane-anchored cell surface protein n=3 Tax=Burkholderia glumae RepID=C5AM66_BURGB
putative membrane-anchored cell surface protein
Putative membrane-anchored cell surface protein {ECO:0000313|EMBL:AJK48651.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" so
rifcsphigho2_01_scaffold_19503_4
unknown

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comp(4396..4617)
-----------------
DNA (222bp)
protein (74aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19503_5
AR15, Woesearchaeaota, DPANN, Archaea

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comp(4691..5338)
-----------------
DNA (648bp)
protein (216aa)
UPI000038E2D0 related cluster id=5800598 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
UPI000038E2D0 related cluster Tax=AR15
rifcsphigho2_01_scaffold_19503_6
Tetrahymena thermophila, Tetrahymena, Hymenostomatida, Oligohymenophorea, Eukaryota

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5408..6040
-----------------
DNA (633bp)
protein (211aa)
TPR Domain containing protein n=1 Tax=Tetrahymena thermophila (strain SB210) RepID=Q24CU7_TETTS
TPR Domain containing protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EAS05661.1}; TaxID=312017 species="Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Hymenostomatida; Tetrahymenina; Tetrahyme
rifcsphigho2_01_scaffold_19503_7
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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6083..6343
-----------------
DNA (261bp)
protein (87aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000364B063
hypothetical protein Tax=RBG_16_Micrarchaeota_49_10_curated
rifcsphigho2_01_scaffold_19503_8
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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6419..7801
-----------------
DNA (1383bp)
protein (461aa)
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] Tax=RBG_16_Micrarchaeota_49_10_curated
serS; serine--tRNA ligase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Methanolinea tarda NOBI-1 RepID=G6FIE0_9EURY
rifcsphigho2_01_scaffold_19503_9

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7916..8104
-----------------
DNA (189bp)
protein (63aa)
30S ribosomal protein S17e n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=RS17E_THEKO
30S ribosomal protein S17e {ECO:0000256|HAMAP-Rule:MF_00511, ECO:0000256|SAAS:SAAS00278999}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
rps17E; 30S ribosomal protein S17e
rifcsphigho2_01_scaffold_19503_10
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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8227..8514
-----------------
DNA (288bp)
protein (96aa)
DNA-binding protein Alba; K03622 archaea-specific DNA-binding protein Tax=RBG_13_Pacearchaeota_36_9_curated
DNA/RNA-binding protein Alba; K03622 archaea-specific DNA-binding protein id=5043654 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA/RNA-binding protein Alba
rifcsphigho2_01_scaffold_19503_11
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

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8707..8919
-----------------
DNA (213bp)
protein (71aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
rifcsphigho2_01_scaffold_19503_12

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8912..9253
-----------------
DNA (342bp)
protein (114aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51199.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
id=4744551 bin=GWC2_OP3_44_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
rifcsphigho2_01_scaffold_19503_13
unknown

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comp(9563..9733)
-----------------
DNA (171bp)
protein (57aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19503_14
unknown

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comp(9982..11007)
-----------------
DNA (1026bp)
protein (342aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19503_15

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comp(11116..11388)
-----------------
DNA (273bp)
protein (91aa)
Marine sediment metagenome DNA, contig: S01H1_S22577 {ECO:0000313|EMBL:GAG25338.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_01_scaffold_19503_16

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comp(11471..13132)
-----------------
DNA (1662bp)
protein (554aa)
ABC-1 domain-containing protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D6Y8_METSW
ABC-1 protein {ECO:0000313|EMBL:KHO53628.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
ABC transporter
rifcsphigho2_01_scaffold_19503_17
unknown

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13303..13455
-----------------
DNA (153bp)
protein (51aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19503_18

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comp(13439..13990)
-----------------
DNA (552bp)
protein (184aa)
Marine sediment metagenome DNA, contig: S03H2_L02382 {ECO:0000313|EMBL:GAH45233.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
hypothetical protein
Uncharacterized protein id=5241122 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_19503_19
unknown

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comp(14022..14234)
-----------------
DNA (213bp)
protein (71aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19503_20
CG_Woesearch_03, Woesearchaeota, Archaea

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14355..14516
-----------------
DNA (162bp)
protein (54aa)
id=5799756 Tax=CG_Woesearch_03
id=5799756 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Displaying 20 items

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