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rifcsphigho2_01_scaffold_3649

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_3649_1
unknown

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3..68
-----------------
DNA (66bp)
protein (22aa)

This feature has no annotations

rifcsphigho2_01_scaffold_3649_2
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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221..1090
-----------------
DNA (870bp)
protein (290aa)
putative DNA methylase Tax=CG_Anaero_03
DNA modification methylase-like protein id=1247695 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
rifcsphigho2_01_scaffold_3649_3
RBG_13_WOR_2_41_10_curated, WOR-2, Bacteria

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1151..1735
-----------------
DNA (585bp)
protein (195aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037322E7
hypothetical protein
hypothetical protein Tax=RBG_13_WOR_2_41_10_curated
rifcsphigho2_01_scaffold_3649_4

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1877..2194
-----------------
DNA (318bp)
protein (106aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036A6D1A
hypothetical protein
Marine sediment metagenome DNA, contig: S01H4_S02303 {ECO:0000313|EMBL:GAG77654.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsphigho2_01_scaffold_3649_5

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2375..3019
-----------------
DNA (645bp)
protein (215aa)
rpl1P; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 id=5045963 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Large subunit ribosomal protein L1 {ECO:0000313|EMBL:KHO45773.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
50S ribosomal protein L1
rifcsphigho2_01_scaffold_3649_6

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3113..3952
-----------------
DNA (840bp)
protein (280aa)
rplP0; acidic ribosomal protein P0; K02864 large subunit ribosomal protein L10 id=5049222 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00280}; Acidic ribosomal protein P0 homolog {ECO:0000256|HAMAP-Rule:MF_00280}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
acidic ribosomal protein P0/50S ribosomal protein L10
rifcsphigho2_01_scaffold_3649_7
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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4066..4356
-----------------
DNA (291bp)
protein (97aa)
50S ribosomal protein L12 n=2 Tax=Methanotorris igneus RepID=G1UBJ0_METIK
50S ribosomal protein L12
50S ribosomal protein L12 {ECO:0000256|HAMAP-Rule:MF_01478}; TaxID=2189 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanotorris ig
rifcsphigho2_01_scaffold_3649_8
CG_Woesearch_02, Woesearchaeota, Archaea

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4406..5275
-----------------
DNA (870bp)
protein (290aa)
phosphoserine phosphatase serb (EC:3.1.3.3); K01079 phosphoserine phosphatase [EC:3.1.3.3] Tax=CG_Woesearch_02
Uncharacterized protein (Fragment) n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV32_9EURY
hypothetical protein
rifcsphigho2_01_scaffold_3649_9
AR4, Woesearchaeaota, DPANN, Archaea

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comp(5343..5687)
-----------------
DNA (345bp)
protein (115aa)
XRE family transcriptional regulator id=5044639 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
XRE family transcriptional regulator Tax=AR4
putative transcription regulator, containing CBS protein
rifcsphigho2_01_scaffold_3649_10
unknown

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comp(5720..5884)
-----------------
DNA (165bp)
protein (55aa)

This feature has no annotations

rifcsphigho2_01_scaffold_3649_11
R_OD1_Magasanikbacteria_47_14, Magasanikbacteria, Parcubacteria, Bacteria

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6181..7470
-----------------
DNA (1290bp)
protein (430aa)
S-adenosylmethionine synthetase; K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_47_14_curated
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] id=5240748 bin=GW2011_AR10_complete species=Candidatus Nitrososphaera gargensis genus=Nitrososphaera taxon_order=Nitrososphaerales taxon_class=unknown phylum=Thaumarchaeota tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_3649_12
R_OD1_Falkowbacteria_45_15, Falkowbacteria, Parcubacteria, Bacteria

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8009..15763
-----------------
DNA (7755bp)
protein (2585aa)
Parallel beta-helix repeat protein n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KNG1_ARCVS
periplasmic copper-binding protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_45_15_curated
parallel beta-helix repeat-containing protein
rifcsphigho2_01_scaffold_3649_13
R_OD1_Falkowbacteria_45_15, Falkowbacteria, Parcubacteria, Bacteria

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16029..18311
-----------------
DNA (2283bp)
protein (761aa)
id=4379344 bin=PER_GWC2_41_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
periplasmic copper-binding protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_45_15_curated
rifcsphigho2_01_scaffold_3649_14
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

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comp(18400..18930)
-----------------
DNA (531bp)
protein (177aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AD68_THEID
methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:AEH44800.1}; Flags: Precursor;; TaxID=667014 species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriac
rifcsphigho2_01_scaffold_3649_15
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(18920..19123)
-----------------
DNA (204bp)
protein (68aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036D73DA
hypothetical protein Tax=CG_Woesearch_02
putative transcriptional regulator
rifcsphigho2_01_scaffold_3649_16
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(19146..20714)
-----------------
DNA (1569bp)
protein (523aa)
putative hybrid histidine kinase (EC:2.7.13.3) Tax=RBG_13_Pacearchaeota_36_9_curated
putative hybrid histidine kinase (EC:2.7.13.3)
PAS domain-containing protein/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase n=1 Tax=Thauera sp. 27 RepID=N6X9U1_9RHOO
rifcsphigho2_01_scaffold_3649_17
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

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comp(20748..21500)
-----------------
DNA (753bp)
protein (251aa)
multi-sensor hybrid histidine kinase Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) id=2588580 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
multi-sensor hybrid histidine kinase
rifcsphigho2_01_scaffold_3649_18

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comp(21497..23638)
-----------------
DNA (2142bp)
protein (714aa)
Signal transduction histidine kinase n=1 Tax=uncultured archaeon GZfos17A3 RepID=Q64E31_9ARCH
Signal transduction histidine kinase {ECO:0000313|EMBL:AAU82346.1}; TaxID=285412 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos17A3.;"
integral membrane sensor signal transduction histidine kinase
rifcsphigho2_01_scaffold_3649_19

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comp(23669..24673)
-----------------
DNA (1005bp)
protein (335aa)
ABC transporter, substrate-binding protein, aliphatic sulfonates family id=2759942 bin=GWA2_Planctomycete_KSU_39_15 species=Desulfosporosinus youngiae genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
Uncharacterized protein {ECO:0000313|EMBL:EKD39536.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
aliphatic sulfonate ABC transporter substrate-binding protein
rifcsphigho2_01_scaffold_3649_20
unknown

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comp(24795..24971)
-----------------
DNA (177bp)
protein (59aa)

This feature has no annotations

rifcsphigho2_01_scaffold_3649_21
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(25046..26323)
-----------------
DNA (1278bp)
protein (426aa)
Putative ATPase (AAA+ superfamily) n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HHD2_METFS
putative ATPase (AAA+ superfamily) Tax=RBG_13_Pacearchaeota_36_9_curated
putative ATPase (AAA+ superfamily)
rifcsphigho2_01_scaffold_3649_22
AR4, Woesearchaeaota, DPANN, Archaea

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comp(26503..27048)
-----------------
DNA (546bp)
protein (182aa)
smooth muscle caldesmon
id=5048073 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR4
rifcsphigho2_01_scaffold_3649_23
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(27138..27584)
-----------------
DNA (447bp)
protein (149aa)
Two-component response regulator n=1 Tax=uncultured archaeon GZfos9E5 RepID=Q647M7_9ARCH
putative two-component hybrid sensor and regulator Tax=RBG_13_Pacearchaeota_36_9_curated
DNA-binding response regulator
rifcsphigho2_01_scaffold_3649_24
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(27586..27939)
-----------------
DNA (354bp)
protein (118aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZU7_THEOJ
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADL08724.1}; Flags: Precursor;; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoana
rifcsphigho2_01_scaffold_3649_25
R_OD1_Falkowbacteria_45_15, Falkowbacteria, Parcubacteria, Bacteria

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comp(28005..29330)
-----------------
DNA (1326bp)
protein (442aa)
putative circadian clock protein KaiC (EC:2.7.11.1) id=5241500 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
RecA-superfamily ATPases implicated in signal transduction Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_45_15_curated
hypothetical protein
rifcsphigho2_01_scaffold_3649_26
Tetrahymena thermophila, Tetrahymena, Hymenostomatida, Oligohymenophorea, Eukaryota

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comp(29457..30809)
-----------------
DNA (1353bp)
protein (451aa)
Guanylate-binding protein, N-terminal domain containing protein n=1 Tax=Tetrahymena thermophila (strain SB210) RepID=I7MA61_TETTS
Amine-terminal domain guanylate-binding protein {ECO:0000313|EMBL:EAS03779.1}; TaxID=312017 species="Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Hymenostomatida; Tetrahyme
protein of unknown function
rifcsphigho2_01_scaffold_3649_27
Entamoeba histolytica, Entamoeba, Eukaryota

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comp(30806..32485)
-----------------
DNA (1680bp)
protein (560aa)
Intracellular protein transport protein USO1, putative (Fragment) n=1 Tax=Entamoeba dispar (strain ATCC PRA-260 / SAW760) RepID=B0ENY4_ENTDS
Viral a-type inclusion protein repeat-containing protein {ECO:0000313|EMBL:ENY63988.1}; TaxID=885318 species="Eukaryota; Amoebozoa; Archamoebae; Entamoebidae; Entamoeba.;" source="Entamoeba histolytic
NAD-dependent DNA ligase
rifcsphigho2_01_scaffold_3649_28
GWA2_OP11_40_7b, Woesebacteria, Microgenomates, Bacteria

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comp(32723..32983)
-----------------
DNA (261bp)
protein (87aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR73123.1}; TaxID=1618562 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA2_40_7.;"
id=5800737 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Displaying 28 items

View Taxonomy