ggKbase home page

rifcsphigho2_01_scaffold_5489

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_5489_1
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

1..1068
-----------------
DNA (1068bp)
protein (356aa)
DNA-directed RNA polymerase, subunit a' (EC:2.7.7.6); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] Tax=AR9
DNA-directed RNA polymerase id=5800702 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase
rifcsphigho2_01_scaffold_5489_2

Not on your lists

1071..2210
-----------------
DNA (1140bp)
protein (380aa)
DNA-directed RNA polymerase subunit A {ECO:0000313|EMBL:KHO49282.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO49282.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
DNA-directed RNA polymerase subunit A'' id=5800703 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase subunit A''
rifcsphigho2_01_scaffold_5489_3
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

2343..2630
-----------------
DNA (288bp)
protein (96aa)
hypothetical protein; K02908 large subunit ribosomal protein L30e Tax=AR9
hypothetical protein; K02908 large subunit ribosomal protein L30e id=5043968 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L30e
rifcsphigho2_01_scaffold_5489_4
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

2639..3070
-----------------
DNA (432bp)
protein (144aa)
NusA family KH domain protein, archaeal n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BEL7_9EURY
NusA family KH domain protein, archaeal
Probable transcription termination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" sourc
rifcsphigho2_01_scaffold_5489_5

Not on your lists


3206..3625
-----------------
DNA (420bp)
protein (140aa)
30S ribosomal protein S12 {ECO:0000256|RuleBase:RU004490}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 id=5043966 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S12
rifcsphigho2_01_scaffold_5489_6

Not on your lists


3706..4305
-----------------
DNA (600bp)
protein (200aa)
Small subunit ribosomal protein S7 {ECO:0000313|EMBL:KHO49278.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7 id=5043965 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S7
rifcsphigho2_01_scaffold_5489_7
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4397..5011
-----------------
DNA (615bp)
protein (205aa)
Uncharacterized protein {ECO:0000313|EMBL:KEQ25969.1}; TaxID=1501230 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MSt1.;"
rifcsphigho2_01_scaffold_5489_8
unknown

Not on your lists

5024..5914
-----------------
DNA (891bp)
protein (297aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5489_9
R_OP3X_45_10, OP3X, Bacteria

Not on your lists

6180..7214
-----------------
DNA (1035bp)
protein (345aa)
Tax=RIFCSPLOWO2_01_FULL_OP3X_45_10_curated
rifcsphigho2_01_scaffold_5489_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(7242..8354)
-----------------
DNA (1113bp)
protein (371aa)
tRNA-guanine transglycosylase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] Tax=CG_Woesearch_02
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Putative queuine tRNA-ribosyltransferase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5ID17_ACIB4
rifcsphigho2_01_scaffold_5489_11

Not on your lists

comp(8611..8922)
-----------------
DNA (312bp)
protein (104aa)
Nucleotidyltransferase n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Q9UYZ8_PYRAB
Uncharacterized protein {ECO:0000313|EMBL:KHO52497.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
hypothetical protein
rifcsphigho2_01_scaffold_5489_12
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9129..9278)
-----------------
DNA (150bp)
protein (50aa)
hypothetical protein Tax=AR17
rifcsphigho2_01_scaffold_5489_13
unknown

Not on your lists

comp(9321..9692)
-----------------
DNA (372bp)
protein (124aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5489_14
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

9852..10376
-----------------
DNA (525bp)
protein (175aa)
ZPR1-like zinc finger protein; K06874 zinc finger protein Tax=AR9
ZPR1-like zinc finger protein; K06874 zinc finger protein id=5049199 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ZPR1-like protein zinc finger protein
rifcsphigho2_01_scaffold_5489_15
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10480..10860)
-----------------
DNA (381bp)
protein (127aa)
hypothetical protein; K07163 Tax=AR9
Zn-ribbon containing protein id=5800623 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Zn-ribbon containing protein
rifcsphigho2_01_scaffold_5489_16
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10982..11377)
-----------------
DNA (396bp)
protein (132aa)
Uncharacterized protein n=2 Tax=Methanothermobacter RepID=D9PV24_METTM id=5103011 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein; K09743 hypothetical protein Tax=AR9
hypothetical protein
rifcsphigho2_01_scaffold_5489_17
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11507..12145)
-----------------
DNA (639bp)
protein (213aa)
small GTP-binding protein; K06883 Tax=AR9
small GTP-binding protein; K06883 id=5044930 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Small GTP-binding protein
rifcsphigho2_01_scaffold_5489_18
unknown

Not on your lists

comp(12286..12768)
-----------------
DNA (483bp)
protein (161aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5489_19
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(12900..13388)
-----------------
DNA (489bp)
protein (163aa)
id=5044628 Tax=CG_Woesearch_02
id=5044628 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_5489_20
RBG_16_Planctomycetes_41_13_curated, Planctomycetes, Bacteria

Not on your lists

comp(13473..14408)
-----------------
DNA (936bp)
protein (312aa)
inorganic polyphosphate/ATP-NAD Kinase; K00858 NAD+ kinase [EC:2.7.1.23] Tax=RBG_16_Planctomycetes_41_13_curated
hypothetical protein
rifcsphigho2_01_scaffold_5489_21
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

14826..15956
-----------------
DNA (1131bp)
protein (377aa)
Tax=CG_Pacearch_06
rifcsphigho2_01_scaffold_5489_22
unknown

Not on your lists

comp(16014..16799)
-----------------
DNA (786bp)
protein (262aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5489_23
R_OD1_Wolfebacteria_45_10c, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

16933..17391
-----------------
DNA (459bp)
protein (153aa)
seg id=5041900 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=RIFCSPLOWO2_02_FULL_OD1_Wolfebacteria_45_10c_curated
rifcsphigho2_01_scaffold_5489_24
R_RIF_OD1_06_42_22, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

17692..18237
-----------------
DNA (546bp)
protein (182aa)
NYN domain protein n=1 Tax=Bacteriovorax sp. Seq25_V RepID=T0SF06_9DELT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_42_22_curated
hypothetical protein
rifcsphigho2_01_scaffold_5489_25
unknown

Not on your lists

18337..18711
-----------------
DNA (375bp)
protein (125aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5489_26
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists


18776..20125
-----------------
DNA (1350bp)
protein (450aa)
signal recognition particle protein Srp54; K03106 signal recognition particle subunit SRP54 Tax=AR9
Signal recognition particle 54 kDa protein id=5800735 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
SRP54-type protein, GTPase protein
Displaying 26 items

View Taxonomy