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rifcsphigho2_01_scaffold_5958

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_5958_1
unknown

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3..143
-----------------
DNA (141bp)
protein (47aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5958_2
unknown

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140..1183
-----------------
DNA (1044bp)
protein (348aa)
SCP-like extracellular n=1 Tax=Pseudanabaena biceps PCC 7429 RepID=L8N240_9CYAN id=5103590 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
SCP-like extracellular n=1 Tax=Pseudanabaena biceps PCC 7429 RepID=L8N240_9CYAN Tax=AR20
SCP-like protein extracellular
rifcsphigho2_01_scaffold_5958_3
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1192..1653
-----------------
DNA (462bp)
protein (154aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y5W7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ03589.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
Sporulation uncharacterized protein YkwD
rifcsphigho2_01_scaffold_5958_4
unknown

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1657..1899
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5958_5
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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2319..3545
-----------------
DNA (1227bp)
protein (409aa)
Fic protein involved in cell division n=51 Tax=cellular organisms RepID=G7QLR3_LEPII id=5103038 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Fic family protein Tax=CG_Aenigma_01
Fic protein involved in cell division
rifcsphigho2_01_scaffold_5958_6
CG_Woesearch_03, Woesearchaeota, Archaea

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3726..5201
-----------------
DNA (1476bp)
protein (492aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TPH1_METAC rbh
hypothetical protein; K07133 Tax=CG_Woesearch_03
hypothetical protein
rifcsphigho2_01_scaffold_5958_7
Saccharomyces cerevisiae, Saccharomyces, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

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comp(5218..6597)
-----------------
DNA (1380bp)
protein (460aa)
Glycoside hydrolase n=1 Tax=Pseudozyma hubeiensis (strain SY62) RepID=R9P9I5_PSEHS
Dan4p {ECO:0000313|EMBL:AJR64230.1}; TaxID=1294313 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.;" source="Sa
LPXTG-motif cell wall anchor domain-containing protein
rifcsphigho2_01_scaffold_5958_8
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(6649..9048)
-----------------
DNA (2400bp)
protein (800aa)
topA; DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=CG_Woesearch_02
DNA topoisomerase I id=5800162 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA topoisomerase 1
rifcsphigho2_01_scaffold_5958_9
unknown

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9226..9660
-----------------
DNA (435bp)
protein (145aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5958_10

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comp(9698..10135)
-----------------
DNA (438bp)
protein (146aa)
hypothetical protein
id=5103856 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF63134.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_5958_11
unknown

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comp(10132..10680)
-----------------
DNA (549bp)
protein (183aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W213_UNCMA id=5103857 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W213_UNCMA Tax=AR20
hypothetical protein
rifcsphigho2_01_scaffold_5958_12

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comp(10740..11615)
-----------------
DNA (876bp)
protein (292aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK50685.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rifcsphigho2_01_scaffold_5958_13
R_OD1_Wolfebacteria_45_10c, Wolfebacteria, Parcubacteria, Bacteria

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comp(11665..13383)
-----------------
DNA (1719bp)
protein (573aa)
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=RIFCSPLOWO2_02_FULL_OD1_Wolfebacteria_45_10c_curated
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GK94_9FIRM
rifcsphigho2_01_scaffold_5958_14
RAAC11, RAAC11, RAAC11, RAAC11, Unknown_CP, Bacteria

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comp(13484..14545)
-----------------
DNA (1062bp)
protein (354aa)
id=24608340 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24608340 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
rifcsphigho2_01_scaffold_5958_15
unknown

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14835..15194
-----------------
DNA (360bp)
protein (120aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5958_16
Thermoplasmatales archaeon BRNA1, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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15266..16438
-----------------
DNA (1173bp)
protein (391aa)
CBS-domain-containing membrane protein n=1 Tax=Thermoplasmatales archaeon BRNA1 RepID=M4YLL1_9EURY
CBS-domain-containing membrane protein
CBS-domain-containing membrane protein {ECO:0000313|EMBL:AGI48069.1}; TaxID=1054217 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon BRNA1.;"
rifcsphigho2_01_scaffold_5958_17
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(16480..17043)
-----------------
DNA (564bp)
protein (188aa)
Tax=CG_Woesearch_02
rifcsphigho2_01_scaffold_5958_18
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(17218..17814)
-----------------
DNA (597bp)
protein (199aa)
phosphatidate cytidylyltransferase Tax=CG_Woesearch_02
hypothetical protein id=5046627 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
phosphatidate cytidylyltransferase
rifcsphigho2_01_scaffold_5958_19
unknown

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17929..18660
-----------------
DNA (732bp)
protein (244aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5958_20
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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18764..19219
-----------------
DNA (456bp)
protein (152aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacte
RNA-splicing ligase RtcB n=3 Tax=Bacteria RepID=D7AJB4_GEOSK
tRNA-splicing ligase
rifcsphigho2_01_scaffold_5958_21

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19219..20229
-----------------
DNA (1011bp)
protein (337aa)
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3] id=5048716 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
tRNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
protein of unknown function UPF0027
rifcsphigho2_01_scaffold_5958_22

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comp(20452..20913)
-----------------
DNA (462bp)
protein (154aa)
Putative transcriptional regulator n=1 Tax=uncultured archaeon RepID=D1JEZ9_9ARCH
Putative transcriptional regulator {ECO:0000313|EMBL:CBH37107.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
putative transcriptional regulator
rifcsphigho2_01_scaffold_5958_23
R_OD1_Uhrbacteria_51_9, Uhrbacteria, Parcubacteria, Bacteria

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21108..21425
-----------------
DNA (318bp)
protein (106aa)
hypothetical protein n=1 Tax=unclassified Euryarchaeota (miscellaneous) RepID=UPI00038184EE
methylase involved in ubiquinone/menaquinone biosynthesis Tax=RIFCSPLOWO2_02_FULL_OD1_Uhrbacteria_51_9_curated
Displaying 23 items

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