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rifcsphigho2_01_scaffold_30058

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_30058_1
AR9, Woesearchaeaota, DPANN, Archaea

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3..683
-----------------
DNA (681bp)
protein (227aa)
ef1a, tuf; elongation factor 1-alpha (EC:3.6.5.3); K03231 elongation factor 1-alpha Tax=AR9
translation elongation factor 1a (ef-1a/ef-tu) (EC:2.7.7.4); K03231 elongation factor 1-alpha id=5043959 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Elongation factor 1-alpha
rifcsphigho2_01_scaffold_30058_2
unknown

Not on your lists

764..1414
-----------------
DNA (651bp)
protein (217aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_3
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(1434..1775)
-----------------
DNA (342bp)
protein (114aa)
id=4744551 Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_01_scaffold_30058_4
unknown

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comp(1776..1901)
-----------------
DNA (126bp)
protein (42aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_5

Not on your lists


2215..2529
-----------------
DNA (315bp)
protein (105aa)
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508, ECO:0000256|SAAS:SAAS00243320}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
rps10p; 30S ribosomal protein S10P; K02946 small subunit ribosomal protein S10 id=5043693 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S10
rifcsphigho2_01_scaffold_30058_6
Azospirillum sp. CAG:260, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2639..3649)
-----------------
DNA (1011bp)
protein (337aa)
Fic n=1 Tax=Azospirillum sp. CAG:260 RepID=R6I259_9PROT
Fic {ECO:0000313|EMBL:CDB40564.1}; TaxID=1262706 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; environmental samples.;" source="Azospirillu
Fic family protein
rifcsphigho2_01_scaffold_30058_7
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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3809..4753
-----------------
DNA (945bp)
protein (315aa)
Putative TIM-barrel protein, nifR3 family n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A4W7_NITMS
nifR3 family TIM-barrel protein
Putative TIM-barrel protein, nifR3 family {ECO:0000313|EMBL:ABX13421.1}; TaxID=436308 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus ma
rifcsphigho2_01_scaffold_30058_8
unknown

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comp(4990..5208)
-----------------
DNA (219bp)
protein (73aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_9
R_Deltaproteobacteria_40_11, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5171..5542)
-----------------
DNA (372bp)
protein (124aa)
transmembrane_regions 7..24 Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_40_11_curated
rifcsphigho2_01_scaffold_30058_10
R_Deltaproteobacteria_40_11, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5481..6152)
-----------------
DNA (672bp)
protein (224aa)
transmembrane_regions 7..24 Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_40_11_curated
transmembrane_regions 7..24 id=18248503 bin=AR5_curated_draft species=ACD61 genus=ACD61 taxon_order=ACD61 taxon_class=ACD61 phylum=OP11 tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
rifcsphigho2_01_scaffold_30058_11
unknown

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comp(6176..7225)
-----------------
DNA (1050bp)
protein (350aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_12
unknown

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7973..8293
-----------------
DNA (321bp)
protein (107aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_13
unknown

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8320..8415
-----------------
DNA (96bp)
protein (32aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_14
unknown

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8433..8570
-----------------
DNA (138bp)
protein (46aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_15
unknown

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comp(8834..9064)
-----------------
DNA (231bp)
protein (77aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_16

Not on your lists

comp(9112..9615)
-----------------
DNA (504bp)
protein (168aa)
peptidase A24A domain-containing protein; K07991 archaeal preflagellin peptidase FlaK [EC:3.4.23.52] id=5043941 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:AIF00785.1}; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_139_C07.;"
Peptidase A24A prepilin type IV
rifcsphigho2_01_scaffold_30058_17

Not on your lists

9863..11023
-----------------
DNA (1161bp)
protein (387aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49665.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
radical SAM domain-containing protein; K07129 id=5050703 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsphigho2_01_scaffold_30058_18
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

11199..11441
-----------------
DNA (243bp)
protein (81aa)
cold-shock protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003672520
cold shock DNA binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=AR9
cold shock DNA binding domain-containing protein
rifcsphigho2_01_scaffold_30058_19
Thermococcus sibiricus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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11583..11969
-----------------
DNA (387bp)
protein (129aa)
Nucleotidyltransferase n=1 Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=C6A3T3_THESM
Nucleotidyltransferase
Nucleotidyltransferase {ECO:0000313|EMBL:ACS90278.1}; TaxID=604354 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus sibiricus (strain
rifcsphigho2_01_scaffold_30058_20
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11969..12406
-----------------
DNA (438bp)
protein (146aa)
hypothetical protein n=1 Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI0003713826
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsphigho2_01_scaffold_30058_21
unknown

Not on your lists

12434..12763
-----------------
DNA (330bp)
protein (110aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_22
R_WOR_1_53_15, WOR-1, Bacteria

Not on your lists

12793..13041
-----------------
DNA (249bp)
protein (83aa)
hypothetical protein; K09131 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_WOR_1_53_15_curated
rifcsphigho2_01_scaffold_30058_23
unknown

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comp(13067..13663)
-----------------
DNA (597bp)
protein (199aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_24
unknown

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comp(13667..14137)
-----------------
DNA (471bp)
protein (157aa)

This feature has no annotations

rifcsphigho2_01_scaffold_30058_25
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

Not on your lists

comp(14194..15219)
-----------------
DNA (1026bp)
protein (342aa)
CMP/dCMP deaminase zinc-binding protein {ECO:0000313|EMBL:KKQ17642.1}; TaxID=1618331 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_36_9.;"
CMP/dCMP deaminase zinc-binding protein id=1767251 bin=GWE2_Bacteroidetes_42_42 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE2_Bacteroidetes_42_42 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
rifcsphigho2_01_scaffold_30058_26
GWE2_OD1_45_35, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

15334..16338
-----------------
DNA (1005bp)
protein (335aa)
Tax=GWE2_OD1_45_35
Displaying 26 items

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