ggKbase home page

rifcsphigho2_01_scaffold_2729_25

Organism: RIFCSPHIGHO2_01_FULL_Archaea_Woesearchaeota_33_11

near complete RP 37 / 55 MC: 5 BSCG 5 / 51 ASCG 32 / 38 MC: 3
Location: 19852..20481

Top 3 Functional Annotations

Value Algorithm Source
Marine sediment metagenome DNA, contig: S01H1_L06225 {ECO:0000313|EMBL:GAF73174.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen similarity UNIPROT
DB: UniProtKB
  • Identity: 42.9
  • Coverage: 175.0
  • Bit_score: 159
  • Evalue 6.30e-36
transcription factor E; K03136 transcription initiation factor TFIIE subunit alpha id=5041815 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18 similarity UNIREF
DB: UNIREF100
  • Identity: 43.7
  • Coverage: 167.0
  • Bit_score: 155
  • Evalue 8.50e-35
Transcription factor E similarity KEGG
DB: KEGG
  • Identity: 35.7
  • Coverage: 213.0
  • Bit_score: 132
  • Evalue 1.30e-28

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

marine sediment metagenome

Sequences

DNA sequence
Length: 630
ATGCGCCTAACTAGACAAAAAATAGAAGAGATCCTCCAAGTAATACTAGGACAAGAAAGTGTTTCTTTTATCAGGATGCTAGCAGATAAAGATAATATTTCTGAATTTGAATTAGCTACTAAAACCAAGAAAGATATAAAAGTAATAAGACGCATGCTTTATTTTCTCTATAATCACAATTTAGTCTCTTTCAACCGTAAAAAAGACAAAATAAAAGGATGGTATATTTATTACTGGACACTTCTACCAGAGAGCATAAAATATTATTATATCAAAACTAAAAAAGAAAAATTAATCAATTTAAAAAAACAATTAGATACAGAAAAAAAAGAATTATTTTATACTTGTCCAAGCAAGTGTACTCGGCTTGATTTTGATAAAGCAATTCATTTTGAGTTCCATTGTCCAGAGTGTGGAGAATTGGTAATGCAAGACAGTTCAGAGAAAAAAGTTCAAGTGATTATTAAAGAGATAACTGATTCAGAAAAAGAATTGGAAAGCTTAGAAAAAGAAACTACAAAAAAAATAGCCCATTCAATTGAGAAAAAAAGTGGCAAAGTAGTTAATAAATTAAGTAGTAAATTAAAGAAAAAACCATCTCTTAAAAAAAATAAGAGTAAAATAAAGTAA
PROTEIN sequence
Length: 210
MRLTRQKIEEILQVILGQESVSFIRMLADKDNISEFELATKTKKDIKVIRRMLYFLYNHNLVSFNRKKDKIKGWYIYYWTLLPESIKYYYIKTKKEKLINLKKQLDTEKKELFYTCPSKCTRLDFDKAIHFEFHCPECGELVMQDSSEKKVQVIIKEITDSEKELESLEKETTKKIAHSIEKKSGKVVNKLSSKLKKKPSLKKNKSKIK*