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rifcsphigho2_01_scaffold_2729

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_2729_1
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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comp(126..872)
-----------------
DNA (747bp)
protein (249aa)
Uncharacterized protein n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I8W1_METCZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD00432.1}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella conradii
rifcsphigho2_01_scaffold_2729_2
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(862..1623)
-----------------
DNA (762bp)
protein (254aa)
Putative transcriptional regulator, TrmB n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I8W0_METCZ
putative transcriptional regulator, TrmB Tax=CG_Woesearch_02
transcriptional regulator, TrmB
rifcsphigho2_01_scaffold_2729_3
CG_Beckwith_02, Beckwithbacteria, Microgenomates, Bacteria

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1940..2167
-----------------
DNA (228bp)
protein (76aa)
DNA polymerase beta domain protein region n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BCZ4_METIK
DNA polymerase subunit beta; K07075 Tax=CG_Beckwith_02
DNA polymerase beta domain-containing protein
rifcsphigho2_01_scaffold_2729_4
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(2243..3061)
-----------------
DNA (819bp)
protein (273aa)
Probable tRNA sulfurtransferase n=2 Tax=Mycoplasma synoviae RepID=THII_MYCS5
thiamine biosynthesis ThiI-like protein; K03151 thiamine biosynthesis protein ThiI Tax=CG_Woesearch_02
thiI; thiamine biosynthesis protein ThiI
rifcsphigho2_01_scaffold_2729_5
AR20, Woesearchaeaota, DPANN, Archaea

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3177..3554
-----------------
DNA (378bp)
protein (126aa)
hypothetical protein
id=5103013 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsphigho2_01_scaffold_2729_6
unknown

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comp(3608..4465)
-----------------
DNA (858bp)
protein (286aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2729_7
unknown

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comp(4549..5199)
-----------------
DNA (651bp)
protein (217aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2729_8

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comp(5302..5445)
-----------------
DNA (144bp)
protein (48aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN29655.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=8265582 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=Methanomicrobia phylum=Euryarchaeota tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
rifcsphigho2_01_scaffold_2729_9
ACD80, SR1, Bacteria

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comp(5882..6814)
-----------------
DNA (933bp)
protein (311aa)
multimeric flavodoxin, WrbA Tax=ACD80
multimeric flavodoxin, WrbA id=132760 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
NADPH-dependent FMN reductase
rifcsphigho2_01_scaffold_2729_10
unknown

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comp(7161..7322)
-----------------
DNA (162bp)
protein (54aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2729_11

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comp(7388..8344)
-----------------
DNA (957bp)
protein (319aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51372.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
hypothetical protein; K09799 hypothetical protein id=5094594 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
rifcsphigho2_01_scaffold_2729_12

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8605..9156
-----------------
DNA (552bp)
protein (184aa)
tbpE; transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5046314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
TATA-box-binding protein
rifcsphigho2_01_scaffold_2729_13
R_Deltaproteobacteria_40_11, Deltaproteobacteria, Proteobacteria, Bacteria

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9345..11366
-----------------
DNA (2022bp)
protein (674aa)
MCM family protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_40_11_curated
Putative ATPase involved in replication control, Cdc46/Mcm family id=5800077 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA replication initiator Cdc21/Cdc54
rifcsphigho2_01_scaffold_2729_14
Candidatus Nanosalina sp. J07AB43, Candidatus Nanosalina, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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11430..12242
-----------------
DNA (813bp)
protein (271aa)
Uncharacterized protein conserved in archaea n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QHY8_9EURY
hypothetical protein
Uncharacterized protein conserved in archaea {ECO:0000313|EMBL:EGQ42868.1}; TaxID=889948 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalina.;" source="Nanosalina sp. (strain J
rifcsphigho2_01_scaffold_2729_15
CG_Pacearch_03, Pacearchaeota, Archaea

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12348..12809
-----------------
DNA (462bp)
protein (154aa)
Uncharacterized protein n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0K952_9BACT
hypothetical protein Tax=CG_Pacearch_03
hypothetical protein
rifcsphigho2_01_scaffold_2729_16
R_Deltaproteobacteria_40_11, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12927..13781)
-----------------
DNA (855bp)
protein (285aa)
hypothetical protein
Uncharacterized membrane protein Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_40_11_curated
Uncharacterized membrane protein id=5041824 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_2729_17
unknown

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13788..13937
-----------------
DNA (150bp)
protein (50aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2729_18
AR9, Woesearchaeaota, DPANN, Archaea

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13940..14896
-----------------
DNA (957bp)
protein (319aa)
rfc; replication factor C small subunit; K04801 replication factor C small subunit Tax=AR9
rfc; replication factor C small subunit; K04801 replication factor C small subunit id=5046355 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Replication factor C small subunit
rifcsphigho2_01_scaffold_2729_19
AR9, Woesearchaeaota, DPANN, Archaea

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comp(14966..15958)
-----------------
DNA (993bp)
protein (331aa)
Tax=AR9
rifcsphigho2_01_scaffold_2729_20
CG_Woesearch_03, Woesearchaeota, Archaea

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16209..16880
-----------------
DNA (672bp)
protein (224aa)
hydrolase related to 2-haloalkanoic acid dehalogenase; K01560 2-haloacid dehalogenase [EC:3.8.1.2] Tax=CG_Woesearch_03
hypothetical protein n=1 Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B3E022
haloacid dehalogenase
rifcsphigho2_01_scaffold_2729_21

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16882..17772
-----------------
DNA (891bp)
protein (297aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_0181
rnz; ribonuclease Z Rnz (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] id=5046343 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNAse Z
rifcsphigho2_01_scaffold_2729_22
unknown

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comp(17769..18527)
-----------------
DNA (759bp)
protein (253aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2729_23
GWA1_OD1_Wolfebacteria_42_9_curated, Wolfebacteria, Parcubacteria, Bacteria

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18676..19215
-----------------
DNA (540bp)
protein (180aa)
hypothetical protein Tax=GWA1_OD1_Wolfebacteria_42_9_curated
Putative uncharacterized protein id=3688777 bin=PER_GWC2_41_7 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein
rifcsphigho2_01_scaffold_2729_24
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(19328..19726)
-----------------
DNA (399bp)
protein (133aa)
resolvase, holliday junction-type; K03552 holliday junction resolvase, archaea type Tax=CG_Woesearch_01
resolvase, holliday junction-type; K03552 holliday junction resolvase, archaea type id=5046341 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Resolvase, Holliday junction-type
rifcsphigho2_01_scaffold_2729_25

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19852..20481
-----------------
DNA (630bp)
protein (210aa)
Marine sediment metagenome DNA, contig: S01H1_L06225 {ECO:0000313|EMBL:GAF73174.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
transcription factor E; K03136 transcription initiation factor TFIIE subunit alpha id=5041815 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Transcription factor E
rifcsphigho2_01_scaffold_2729_26

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comp(20519..20716)
-----------------
DNA (198bp)
protein (66aa)
seg id=5800104 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61435.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
rifcsphigho2_01_scaffold_2729_27

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20865..21272
-----------------
DNA (408bp)
protein (136aa)
Translation initiation factor 2 subunit beta n=2 Tax=Methanothermobacter RepID=IF2B_METTH id=5103227 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Translation initiation factor 2 subunit beta
Translation initiation factor 2 subunit beta {ECO:0000256|HAMAP-Rule:MF_00232}; aIF2-beta {ECO:0000256|HAMAP-Rule:MF_00232}; eIF-2-beta {ECO:0000256|HAMAP-Rule:MF_00232}; TaxID=1579378 species="Archae
rifcsphigho2_01_scaffold_2729_28
CG_Woesearch_01, Woesearchaeota, Archaea

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21333..21641
-----------------
DNA (309bp)
protein (103aa)
Uncharacterized protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LMD3_THEBM
hypothetical protein; K09148 hypothetical protein Tax=CG_Woesearch_01
hypothetical protein
rifcsphigho2_01_scaffold_2729_29
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(21666..25262)
-----------------
DNA (3597bp)
protein (1199aa)
DNA polymerase II large subunit (EC:2.7.7.7); K02322 DNA polymerase II large subunit [EC:2.7.7.7] Tax=RBG_13_Woesearchaeota_36_6_curated
DNA polymerase II large subunit id=5800100 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA polymerase II large subunit
rifcsphigho2_01_scaffold_2729_30
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(25428..27179)
-----------------
DNA (1752bp)
protein (584aa)
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] Tax=CG_Woesearch_02
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] id=5046338 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Displaying items 1-30 of 31 in total

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