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rifcsphigho2_01_scaffold_22914

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_22914_1

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comp(1..1533)
-----------------
DNA (1533bp)
protein (511aa)
Sodium/hydrogen exchanger {ECO:0000313|EMBL:KHO51750.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
sodium/hydrogen exchanger id=5043948 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Transporter, CPA2 family
rifcsphigho2_01_scaffold_22914_2

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comp(1585..1815)
-----------------
DNA (231bp)
protein (77aa)
DNA/RNA-binding protein Alba n=2 Tax=Methanotorris RepID=F6BCD3_METIK id=5103050 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA/RNA-binding protein Alba
DNA/RNA-binding protein Alba {ECO:0000313|EMBL:AJF62331.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_22914_3

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comp(1924..2112)
-----------------
DNA (189bp)
protein (63aa)
30S ribosomal protein S17e n=5 Tax=Thermococcus RepID=RS17E_PYRKO id=5103051 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S17e
30S ribosomal protein S17e {ECO:0000256|HAMAP-Rule:MF_00511, ECO:0000256|SAAS:SAAS00278999}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_22914_4

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comp(2404..2871)
-----------------
DNA (468bp)
protein (156aa)
AsnC family transcriptional regulator id=5045866 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
AsnC family transcriptional regulator {ECO:0000313|EMBL:KHO46479.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
AsnC family transcriptional regulator
rifcsphigho2_01_scaffold_22914_5

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2994..3929
-----------------
DNA (936bp)
protein (312aa)
Phosphate uptake regulator PhoU {ECO:0000313|EMBL:KHO51350.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Putative PhoU family protein id=5045862 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_01_scaffold_22914_6
unknown

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comp(3921..5321)
-----------------
DNA (1401bp)
protein (467aa)

This feature has no annotations

rifcsphigho2_01_scaffold_22914_7

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comp(5346..6455)
-----------------
DNA (1110bp)
protein (370aa)
RNA methylase n=3 Tax=Sulfolobus acidocaldarius RepID=Q4J9A5_SULAC id=5103052 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
RNA methylase
RNA methylase {ECO:0000313|EMBL:AJF62333.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_22914_8
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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6537..7205
-----------------
DNA (669bp)
protein (223aa)
Uncharacterized protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZA4_METFV
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP77636.1}; Flags: Precursor;; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source
rifcsphigho2_01_scaffold_22914_9
AR20, Woesearchaeaota, DPANN, Archaea

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comp(7192..8106)
-----------------
DNA (915bp)
protein (305aa)
hypothetical protein
id=5103053 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsphigho2_01_scaffold_22914_10
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(8146..8745)
-----------------
DNA (600bp)
protein (200aa)
tRNA-splicing endonuclease subunit alpha; K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037FB5D0
tRNA-intron endonuclease
rifcsphigho2_01_scaffold_22914_11

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8798..9691
-----------------
DNA (894bp)
protein (298aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_0181
RNAse Z n=1 Tax=nanoarchaeote Nst1 RepID=R1E5I6_9ARCH id=5103055 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
RNAse Z
rifcsphigho2_01_scaffold_22914_12
unknown

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comp(9671..10477)
-----------------
DNA (807bp)
protein (269aa)

This feature has no annotations

rifcsphigho2_01_scaffold_22914_13
unknown

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comp(10505..10789)
-----------------
DNA (285bp)
protein (95aa)

This feature has no annotations

rifcsphigho2_01_scaffold_22914_14
unknown

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comp(10987..11079)
-----------------
DNA (93bp)
protein (31aa)

This feature has no annotations

Displaying 14 items

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