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rifcsphigho2_01_scaffold_17293

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_17293_1

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221..1138
-----------------
DNA (918bp)
protein (306aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037EA6E5
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3
rifcsphigho2_01_scaffold_17293_2

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1135..1944
-----------------
DNA (810bp)
protein (270aa)
50S ribosomal protein L4 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL4_NANEQ id=5103253 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS11732.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4
rifcsphigho2_01_scaffold_17293_3

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1941..2207
-----------------
DNA (267bp)
protein (89aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
Large subunit ribosomal protein L23 {ECO:0000313|EMBL:KHO52369.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
50S ribosomal protein L23P
rifcsphigho2_01_scaffold_17293_4

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2210..2929
-----------------
DNA (720bp)
protein (240aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003710343
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS11733.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2
rifcsphigho2_01_scaffold_17293_5

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2930..3325
-----------------
DNA (396bp)
protein (132aa)
30S ribosomal protein S19P n=1 Tax=Thermococcus sp. CL1 RepID=I3ZSZ6_9EURY
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19
rifcsphigho2_01_scaffold_17293_6

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3327..3758
-----------------
DNA (432bp)
protein (144aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5042305 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L22P
rifcsphigho2_01_scaffold_17293_7

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3755..4486
-----------------
DNA (732bp)
protein (244aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQX0_9ZZZZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
rifcsphigho2_01_scaffold_17293_8
AR17, Woesearchaeaota, DPANN, Archaea

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4464..4670
-----------------
DNA (207bp)
protein (69aa)
50S ribosomal protein L29 n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI000379B164
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=AR17
50S ribosomal protein L29
rifcsphigho2_01_scaffold_17293_9
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

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4667..4981
-----------------
DNA (315bp)
protein (105aa)
translation initiation factor Sui1; K03113 translation initiation factor 1 Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
translation initiation factor SUI1; K03113 translation initiation factor 1 id=5046847 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Protein translation factor SUI1-like protein
rifcsphigho2_01_scaffold_17293_10
Methanocaldococcus sp. JH146, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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4978..5250
-----------------
DNA (273bp)
protein (91aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035D6FA3
Ribonuclease P
rifcsphigho2_01_scaffold_17293_11

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5247..5576
-----------------
DNA (330bp)
protein (110aa)
30S ribosomal protein S17P n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VYH7_9EURY id=5103261 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12655.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17P
rifcsphigho2_01_scaffold_17293_12
CG_Woesearch_02, Woesearchaeota, Archaea

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5573..5974
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=CG_Woesearch_02
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=5041769 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
50S ribosomal protein L14P
rifcsphigho2_01_scaffold_17293_13

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5976..6362
-----------------
DNA (387bp)
protein (129aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L26e
rifcsphigho2_01_scaffold_17293_14

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6359..7069
-----------------
DNA (711bp)
protein (237aa)
30S ribosomal protein S4e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD1_METFV id=5103264 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S4e
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_17293_15

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7056..7556
-----------------
DNA (501bp)
protein (167aa)
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5046852 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Large subunit ribosomal protein L5 {ECO:0000313|EMBL:KHO54245.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
50S ribosomal protein L5
rifcsphigho2_01_scaffold_17293_16
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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7558..7788
-----------------
DNA (231bp)
protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5046853 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
SSU ribosomal protein S14P
rifcsphigho2_01_scaffold_17293_17
Methanothermococcus okinawensis, Methanothermococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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7796..8179
-----------------
DNA (384bp)
protein (128aa)
30S ribosomal protein S8 n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AM72_METOI
30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=647113 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanothermococcus.;" source="Methanothermoc
rifcsphigho2_01_scaffold_17293_18

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8181..8726
-----------------
DNA (546bp)
protein (182aa)
50S ribosomal protein L6 n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI00036C8C09
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS11707.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
rifcsphigho2_01_scaffold_17293_19

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8723..9280
-----------------
DNA (558bp)
protein (186aa)
50S ribosomal protein L32; K02912 large subunit ribosomal protein L32e id=5042318 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO46816.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rpl32e; 50S ribosomal protein L32
rifcsphigho2_01_scaffold_17293_20
CG_Woesearch_02, Woesearchaeota, Archaea

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9286..9774
-----------------
DNA (489bp)
protein (163aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000381F97D
LSU ribosomal protein l19e; K02885 large subunit ribosomal protein L19e Tax=CG_Woesearch_02
50S ribosomal protein L19e
rifcsphigho2_01_scaffold_17293_21
Methanothermobacter sp. CaT2, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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9734..10285
-----------------
DNA (552bp)
protein (184aa)
50S ribosomal protein L18P n=1 Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GGL1_METTF
rpl18p; 50S ribosomal protein L18P
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=866790 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Meth
rifcsphigho2_01_scaffold_17293_22
AR17, Woesearchaeaota, DPANN, Archaea

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10287..10964
-----------------
DNA (678bp)
protein (226aa)
30S ribosomal protein S5 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036370A2
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=AR17
30S ribosomal protein S5
rifcsphigho2_01_scaffold_17293_23

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10966..11442
-----------------
DNA (477bp)
protein (159aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003719CE9
50S ribosomal protein L30P
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_17293_24

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11444..11857
-----------------
DNA (414bp)
protein (138aa)
50S ribosomal protein L15P n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZE1_METFV id=5103274 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L15P
rifcsphigho2_01_scaffold_17293_25
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

11859..13280
-----------------
DNA (1422bp)
protein (474aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037B7C1F
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=AR17
Protein translocase subunit SecY
rifcsphigho2_01_scaffold_17293_26

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13282..13740
-----------------
DNA (459bp)
protein (153aa)
Putative uncharacterized protein n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VRS7_METIM id=5103276 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62557.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_17293_27
AR17, Woesearchaeaota, DPANN, Archaea

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13761..14003
-----------------
DNA (243bp)
protein (81aa)
50S ribosomal protein L34e n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7J1_METSW
ribosomal protein L34e; K02915 large subunit ribosomal protein L34e Tax=AR17
50S ribosomal protein L34
rifcsphigho2_01_scaffold_17293_28

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14005..14331
-----------------
DNA (327bp)
protein (109aa)
Large subunit ribosomal protein L14e {ECO:0000313|EMBL:KHO51240.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
50S ribosomal protein L14e id=5800175 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L14e
rifcsphigho2_01_scaffold_17293_29

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14312..14692
-----------------
DNA (381bp)
protein (127aa)
Prefoldin subunit alpha n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXD5_METFV
Marine sediment metagenome DNA, contig: S06H3_L04061 {ECO:0000313|EMBL:GAI04216.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
prefoldin subunit alpha
rifcsphigho2_01_scaffold_17293_30
AR15, Woesearchaeaota, DPANN, Archaea

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14958..15458
-----------------
DNA (501bp)
protein (167aa)
2-alkenal reductase; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5048857 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
TATA-box-binding protein
TATA-box-binding protein Tax=AR15
Displaying items 1-30 of 31 in total

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