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rifcsphigho2_01_scaffold_19596

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_19596_1
unknown

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comp(1..885)
-----------------
DNA (885bp)
protein (295aa)
DNA-directed RNA polymerase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR9_METFV id=5103778 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR9_METFV Tax=AR20
DNA-directed RNA polymerase
rifcsphigho2_01_scaffold_19596_2

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comp(899..2386)
-----------------
DNA (1488bp)
protein (496aa)
DNA-directed RNA polymerase subunit B {ECO:0000313|EMBL:KHO52597.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO52597.1};; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
DNA-directed RNA polymerase n=6 Tax=Thermococcus RepID=Q5JE32_PYRKO id=5103779 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase
rifcsphigho2_01_scaffold_19596_3

Not on your lists

comp(2379..2612)
-----------------
DNA (234bp)
protein (78aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
DNA-directed RNA polymerase, subunit H n=1 Tax=nanoarchaeote Nst1 RepID=R1E493_9ARCH id=5103780 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase, subunit H
rifcsphigho2_01_scaffold_19596_4
unknown

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comp(2619..2792)
-----------------
DNA (174bp)
protein (58aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19596_5
unknown

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3090..3809
-----------------
DNA (720bp)
protein (240aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19596_6

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4234..4896
-----------------
DNA (663bp)
protein (221aa)
Metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein (Fragment) n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WJV3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KHO55267.1}; TaxID=1579377 species="Archaea.;" source="archaeon GW2011_AR19.;"
ATP binding protein
rifcsphigho2_01_scaffold_19596_7
CG_Pacearch_05, Pacearchaeota, Archaea

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4898..5440
-----------------
DNA (543bp)
protein (181aa)
Glutamine amidotransferase class-I n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WNG2_METH6
Glutamine amidotransferase class-I Tax=CG_Pacearch_05
Glutamine amidotransferase class-I
rifcsphigho2_01_scaffold_19596_8
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(5441..5962)
-----------------
DNA (522bp)
protein (174aa)
nucleoside-diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] id=5045753 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
nucleoside-diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=AR18
nucleoside diphosphate kinase
rifcsphigho2_01_scaffold_19596_9
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(5929..6108)
-----------------
DNA (180bp)
protein (60aa)
50S ribosomal protein L24e n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KPY0_ARCVS
rpl24E; 50S ribosomal protein L24E; K02896 large subunit ribosomal protein L24e Tax=CG_Woesearch_02
50S ribosomal protein L24
rifcsphigho2_01_scaffold_19596_10

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comp(6110..6412)
-----------------
DNA (303bp)
protein (101aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003790FD9
30S ribosomal protein S28e {ECO:0000256|HAMAP-Rule:MF_00292}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
30S ribosomal protein S28e
rifcsphigho2_01_scaffold_19596_11
unknown

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comp(6420..6758)
-----------------
DNA (339bp)
protein (113aa)
50S ribosomal protein L7Ae n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=RL7A_AERPE id=5103741 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L7Ae n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=RL7A_AERPE Tax=AR20
50S ribosomal protein L7Ae
rifcsphigho2_01_scaffold_19596_12
CG_Woesearch_01, Woesearchaeota, Archaea

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7094..7267
-----------------
DNA (174bp)
protein (58aa)
id=5047306 Tax=CG_Woesearch_01
id=5047306 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_01_scaffold_19596_13
unknown

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7311..7685
-----------------
DNA (375bp)
protein (125aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19596_14
R_WOR_2_45_21, WOR-2, Bacteria

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comp(7696..8433)
-----------------
DNA (738bp)
protein (246aa)
zinc/iron permease Tax=RIFCSPHIGHO2_02_FULL_WOR_2_45_21_curated
Zinc transporter, ZIP family
Zinc/iron permease id=2194114 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
rifcsphigho2_01_scaffold_19596_15
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(8452..9429)
-----------------
DNA (978bp)
protein (326aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003824DB2
gcp; DNA-binding/iron metalloprotein/AP endonuclease; K15900 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=AR17
putative bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein
rifcsphigho2_01_scaffold_19596_16
unknown

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comp(9465..9611)
-----------------
DNA (147bp)
protein (49aa)

This feature has no annotations

Displaying 16 items

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