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rifcsphigho2_01_scaffold_51024

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_51024_1
unknown

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10..177
-----------------
DNA (168bp)
protein (56aa)

This feature has no annotations

rifcsphigho2_01_scaffold_51024_2
AR6, Pacearchaeaota, DPANN, Archaea

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comp(178..1248)
-----------------
DNA (1071bp)
protein (357aa)
Putative uncharacterized protein n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=Q2NGY9_METST id=5103806 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein Tax=AR6
hypothetical protein
rifcsphigho2_01_scaffold_51024_3
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(1274..1477)
-----------------
DNA (204bp)
protein (68aa)
enolase (EC:4.2.1.11)
enolase n=1 Tax=Methanobrevibacter smithii RepID=UPI0003643A74
eno; phosphopyruvate hydratase Eno Tax=CG_Pacearch_04
rifcsphigho2_01_scaffold_51024_4
AR17, Woesearchaeaota, DPANN, Archaea

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comp(1452..2357)
-----------------
DNA (906bp)
protein (302aa)
phosphopyruvate hydratase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11] Tax=AR17
phosphopyruvate hydratase (EC:4.2.1.11)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035E3B39
rifcsphigho2_01_scaffold_51024_5

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2411..2629
-----------------
DNA (219bp)
protein (73aa)
hypothetical protein
Marine sediment metagenome DNA, contig: S01H1_S06361 {ECO:0000313|EMBL:GAG13804.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
id=5050163 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_01_scaffold_51024_6

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2622..2834
-----------------
DNA (213bp)
protein (71aa)
hypothetical protein
Marine sediment metagenome DNA, contig: S01H1_C00310 {ECO:0000313|EMBL:GAF75361.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Putative uncharacterized protein id=3133066 bin=GWA2_Ignavibacteria-rel_35_8 species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
rifcsphigho2_01_scaffold_51024_7
unknown

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2836..2925
-----------------
DNA (90bp)
protein (30aa)

This feature has no annotations

rifcsphigho2_01_scaffold_51024_8
unknown

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comp(3019..3219)
-----------------
DNA (201bp)
protein (67aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000360FC43
UPI000021CFC7 related cluster n=1 Tax=unknown RepID=UPI000021CFC7 Tax=AR20
hypothetical protein
rifcsphigho2_01_scaffold_51024_9
GWA2_OP11_46_7, Microgenomates, Bacteria

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comp(3216..4001)
-----------------
DNA (786bp)
protein (262aa)
rrp42p; exosome complex RNA-binding protein Rrp42 (EC:3.1.13.-); K12589 exosome complex component RRP42 id=5045737 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
3'-5' exoribonuclease Tax=GWA2_OP11_46_7
Ribosomal RNA-processing protein RRP42
rifcsphigho2_01_scaffold_51024_10
AR17, Woesearchaeaota, DPANN, Archaea

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comp(3991..4701)
-----------------
DNA (711bp)
protein (237aa)
exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=AR17
3' exoribonuclease id=5800800 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
exosome complex exonuclease Rrp41
rifcsphigho2_01_scaffold_51024_11

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comp(4698..5384)
-----------------
DNA (687bp)
protein (229aa)
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
putative exosome complex RNA-binding protein 1
Probable exosome complex RNA-binding protein 1 id=5800799 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_01_scaffold_51024_12
AR17, Woesearchaeaota, DPANN, Archaea

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comp(5387..6085)
-----------------
DNA (699bp)
protein (233aa)
Ribosome maturation protein SDO1 homolog n=4 Tax=Methanocaldococcus RepID=SDO1_METJA id=5103843 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
putative RNA-associated protein; K14574 ribosome maturation protein SDO1 Tax=AR17
Ribosome maturation protein SDO1-like protein
rifcsphigho2_01_scaffold_51024_13

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comp(6087..6713)
-----------------
DNA (627bp)
protein (209aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA
Proteasome subunit alpha n=3 Tax=Thermococcus RepID=PSA_THESM id=5103842 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Proteasome subunit alpha
Displaying 13 items

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