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rifcsphigho2_01_scaffold_8696

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_8696_1

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53..295
DNA (243bp) protein (81aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51260.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
rifcsphigho2_01_scaffold_8696_2
Thermococcus litoralis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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296..700
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZLV5_THELI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHR79042.1}; TaxID=523849 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus litoralis (strai
rifcsphigho2_01_scaffold_8696_3
CG_Pacearch_05, Pacearchaeota, Archaea

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comp(778..1170)
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JDX3_9ARCH
PIN domain protein Tax=CG_Pacearch_05
PilT domain-containing protein
rifcsphigho2_01_scaffold_8696_4
unknown

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comp(1151..1360)
DNA (210bp) protein (70aa)

This feature has no annotations

rifcsphigho2_01_scaffold_8696_5
unknown

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comp(1434..1562)
DNA (129bp) protein (43aa)

This feature has no annotations

rifcsphigho2_01_scaffold_8696_6
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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1572..1784
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000378D7E0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB03004.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula form
rifcsphigho2_01_scaffold_8696_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1771..2001
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036834B8
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:KCZ71327.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatu
YcfA family protein
rifcsphigho2_01_scaffold_8696_8
Chelonia mydas, Chelonia, Testudines, Chordata, Metazoa

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comp(2012..3193)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Pristionchus pacificus RepID=H3FE90_PRIPA
Uncharacterized protein {ECO:0000313|EMBL:EMP42701.1}; TaxID=8469 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudines; Cryptodira; Durocryptodira; Amer
rifcsphigho2_01_scaffold_8696_9

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3383..3748
DNA (366bp) protein (122aa)
add45; ribosomal protein L7Ae/L30e/S12e/Glarge subunit ribosomal protein L7Ae
ribosomal protein L7Ae/L30e/S12e/Gadd45; K02936 large subunit ribosomal protein L7Ae id=5241390 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L7Ae {ECO:0000256|HAMAP-Rule:MF_00326}; Ribosomal protein L8e {ECO:0000256|HAMAP-Rule:MF_00326}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_8696_10

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3759..3968
DNA (210bp) protein (70aa)
30S ribosomal protein S28, small subunit ribosomal protein S28e
rps28e; 30S ribosomal protein S28; K02979 small subunit ribosomal protein S28e id=5241391 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S28e {ECO:0000256|HAMAP-Rule:MF_00292}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_8696_11
RBG_13_Euryarchaeota_57_23_curated, Euryarchaeota, Archaea

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4003..4323
DNA (321bp) protein (107aa)
50S ribosomal protein L24e n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TBW7_9EURY
50S ribosomal protein L24e Tax=RBG_13_Euryarchaeota_57_23_curated
50S ribosomal protein L24e
rifcsphigho2_01_scaffold_8696_12
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

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4333..4797
DNA (465bp) protein (155aa)
ndk; nucleoside diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] id=5802801 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
nucleoside-diphosphate kinase (EC:2.7.4.6)
rifcsphigho2_01_scaffold_8696_13
Methanosarcina sp. Kolksee, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4803..5297
DNA (495bp) protein (165aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Probable deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00635}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00635};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00635};; dUTP pyro
Probable deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=DUT_ARCFU
rifcsphigho2_01_scaffold_8696_14
AR10, Diapherotrites, DPANN, Archaea

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5333..7078
DNA (1746bp) protein (582aa)
translation initiation factor IF-2, translation initiation factor 5B
InfB_2; translation initiation factor IF-2; K03243 translation initiation factor 5B id=5241395 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
InfB_2; translation initiation factor IF-2; K03243 translation initiation factor 5B Tax=AR10
rifcsphigho2_01_scaffold_8696_15

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7091..7594
DNA (504bp) protein (168aa)
30S ribosomal protein S6e {ECO:0000256|HAMAP-Rule:MF_00512, ECO:0000256|SAAS:SAAS00018829}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
30S ribosomal protein S6e, small subunit ribosomal protein S6e
rps6e; 30S ribosomal protein S6e; K02991 small subunit ribosomal protein S6e id=5241396 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_8696_16

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7613..8812
DNA (1200bp) protein (400aa)
Translation initiation factor 2 subunit 3 {ECO:0000313|EMBL:KHO55203.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
translation initiation factor 2 subunit 3
translation initiation factor 2 subunit gamma (aeif-2g); K03242 translation initiation factor 2 subunit 3 id=5241397 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_8696_17

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8796..9173
DNA (378bp) protein (126aa)
PilT domain protein n=1 Tax=Natronococcus occultus SP4 RepID=L0JYK0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KHO55204.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
PilT domain protein
rifcsphigho2_01_scaffold_8696_18

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9196..9813
DNA (618bp) protein (206aa)
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:KHO55205.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO55205.1};; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
DNA-directed RNA polymerase (EC:2.7.7.6); K03049 DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] id=5241399 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_8696_19
AR10, Diapherotrites, DPANN, Archaea

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9814..10005
DNA (192bp) protein (64aa)
transcription elongation factor Spt4/RpoE2, zinc finger protein, DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
Spt4; transcription elongation factor Spt4/RpoE2, zinc finger protein; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] id=5241400 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Spt4; transcription elongation factor Spt4/RpoE2, zinc finger protein; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] Tax=AR10
rifcsphigho2_01_scaffold_8696_20
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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10010..10318
DNA (309bp) protein (103aa)
30S ribosomal protein S24e n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D3X2_METSW
30S ribosomal protein S24
30S ribosomal protein S24e {ECO:0000256|HAMAP-Rule:MF_00545, ECO:0000256|RuleBase:RU004382}; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Met
rifcsphigho2_01_scaffold_8696_21
CG_CPArch01-01, CG_CPArch01, Archaea

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10358..10546
DNA (189bp) protein (63aa)
30S ribosomal protein S27ae n=1 Tax=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) RepID=RS27A_METVS
30S ribosomal protein S27ae; K02977 small subunit ribosomal protein S27Ae Tax=CG_CPArch01-01
30S ribosomal protein S27ae
rifcsphigho2_01_scaffold_8696_22

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10588..11088
DNA (501bp) protein (167aa)
CAAX protease self-immunity
CAAX protease self-immunity id=5241403 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
CAAX protease self-immunity {ECO:0000313|EMBL:AJF60394.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_8696_23

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11094..11705
DNA (612bp) protein (204aa)
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein id=5040674 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
tRNA threonylcarbamoyladenosine biosynthesis protein {ECO:0000313|EMBL:KHO47786.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
tRNA threonylcarbamoyladenosine biosynthesis protein
rifcsphigho2_01_scaffold_8696_24

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11702..12697
DNA (996bp) protein (332aa)
DNA-binding/iron metalloprotein/AP endonuclease, tRNA threonylcarbamoyladenosine biosynthesis protein
gcp; DNA-binding/iron metalloprotein/AP endonuclease; K15900 tRNA threonylcarbamoyladenosine biosynthesis protein id=5241405 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
DNA-binding/iron metalloprotein/AP endonuclease, tRNA threonylcarbamoyladenosine biosynthesis protein {ECO:0000313|EMBL:AJF60396.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_8696_25
Candidatus Methanomethylophilus alvus, Candidatus Methanomethylophilus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

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comp(12793..13941)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=2 Tax=Euryarchaeota RepID=M9SK24_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI85827.1}; TaxID=1236689 species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Candidatus Methanomethylophilus
rifcsphigho2_01_scaffold_8696_26
unknown

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comp(13975..14655)
DNA (681bp) protein (227aa)

This feature has no annotations

rifcsphigho2_01_scaffold_8696_27
unknown

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comp(15089..15616)
DNA (528bp) protein (176aa)

This feature has no annotations

rifcsphigho2_01_scaffold_8696_28

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comp(15604..18171)
DNA (2568bp) protein (856aa)
hypothetical protein
Cell wall surface anchor family protein {ECO:0000313|EMBL:KHO55611.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
transmembrane_regions id=5240971 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_8696_29
AR10, Diapherotrites, DPANN, Archaea

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comp(18279..18749)
DNA (471bp) protein (157aa)
hypothetical protein
hypothetical protein id=5241408 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein Tax=AR10
rifcsphigho2_01_scaffold_8696_30
RBG_19FT_COMBO_Euryarchaeota_56_21_curated, Euryarchaeota, Archaea

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18820..19257
DNA (438bp) protein (146aa)
Small heat shock protein n=3 Tax=Pyrococcus furiosus RepID=E7FI46_PYRFU
hsp22; heat-shock protein Hsp22 Tax=RBG_19FT_COMBO_Euryarchaeota_56_21_curated
small heat shock protein
Displaying items 1-30 of 36 in total

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