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rifcsphigho2_01_scaffold_6970

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_6970_1
Thermoanaerobacter italicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..849)
-----------------
DNA (849bp)
protein (283aa)
Aminotransferase class I and II n=2 Tax=Thermoanaerobacter RepID=D3T8Z4_THEIA
class I and II aminotransferase
Aminotransferase class I and II {ECO:0000313|EMBL:ADD02426.1}; TaxID=580331 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Th
rifcsphigho2_01_scaffold_6970_2
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(851..1135)
-----------------
DNA (285bp)
protein (95aa)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000255|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000255|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000255|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetra
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=PHS_ROSS1
transcriptional coactivator/pterin dehydratase
rifcsphigho2_01_scaffold_6970_3
unknown

Not on your lists

comp(1244..1531)
-----------------
DNA (288bp)
protein (96aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6970_4
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(1617..2156)
-----------------
DNA (540bp)
protein (180aa)
Thiol-disulfide isomerase or thioredoxin n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6ZNT6_MELRP
thiol-disulfide isomerase or thioredoxin
Thiol-disulfide isomerase or thioredoxin {ECO:0000313|EMBL:AFN73684.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source
rifcsphigho2_01_scaffold_6970_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

2212..2607
-----------------
DNA (396bp)
protein (132aa)
response regulator receiver protein id=14424850 bin=bin1_lowGC tax=bin1_lowGC organism_group=Unknown_CP
Response regulator containing a CheY-like receiver domain and a GGDEF domain {ECO:0000313|EMBL:CDM65625.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" s
response regulator receiver protein
rifcsphigho2_01_scaffold_6970_6
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(2600..3301)
-----------------
DNA (702bp)
protein (234aa)
Oxidoreductase FAD-binding domain protein id=5799967 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Oxidoreductase FAD-binding domain protein Tax=AR15
oxidoreductase FAD-binding domain-containing protein
rifcsphigho2_01_scaffold_6970_7

Not on your lists

comp(3347..3577)
-----------------
DNA (231bp)
protein (77aa)
4fe-4S ferredoxin IroN-sulfur binding domaiN-containing protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EPD3_EMTOG id=5103558 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
4fe-4S ferredoxin IroN-sulfur binding domaiN-containing protein
4fe-4S ferredoxin IroN-sulfur binding domaiN-containing protein {ECO:0000313|EMBL:AJF62839.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_6970_8
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(3614..4099)
-----------------
DNA (486bp)
protein (162aa)
Vitamin K epoxide reductase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCX5_THET1
vitamin K epoxide reductase
Vitamin K epoxide reductase {ECO:0000313|EMBL:ACZ42640.1}; Flags: Precursor;; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
rifcsphigho2_01_scaffold_6970_9
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(4109..4522)
-----------------
DNA (414bp)
protein (138aa)
Protein involved in disulfide bond formation id=5799831 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Protein involved in disulfide bond formation Tax=AR15
Vitamin K epoxide reductase
rifcsphigho2_01_scaffold_6970_10
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(4506..5039)
-----------------
DNA (534bp)
protein (178aa)
transmembrane_regions 110..132 id=31599 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
Uncharacterized protein {ECO:0000313|EMBL:KKT75953.1}; TaxID=1619057 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_44_7.;"
rifcsphigho2_01_scaffold_6970_11
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(5041..5886)
-----------------
DNA (846bp)
protein (282aa)
Cytochrome c biogenesis protein transmembrane region id=5799832 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Cytochrome c biogenesis protein transmembrane region Tax=AR15
cytochrome c biogenesis transmembrane protein
rifcsphigho2_01_scaffold_6970_12
RBG_13_Euryarchaeota_31_8_curated, Euryarchaeota, Archaea

Not on your lists

6118..6540
-----------------
DNA (423bp)
protein (141aa)
Putative signal transduction protein with CBS domains n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXK7_METFV
signal transduction protein with cbs domains Tax=RBG_13_Euryarchaeota_31_8_curated
signal transduction protein with cbs domains
rifcsphigho2_01_scaffold_6970_13
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6543..6812
-----------------
DNA (270bp)
protein (90aa)
Acylphosphatase {ECO:0000256|RuleBase:RU000553, ECO:0000256|SAAS:SAAS00255930}; EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553, ECO:0000313|EMBL:CCE22697.1};; TaxID=1091494 species="Bacteria; Proteobacteri
acylphosphatase n=1 Tax=Methylomicrobium buryatense RepID=UPI0003483264
acyP; acylphosphatase
rifcsphigho2_01_scaffold_6970_14
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(6792..7121)
-----------------
DNA (330bp)
protein (110aa)
Tax=RBG_13_Woesearchaeota_36_6_curated
rifcsphigho2_01_scaffold_6970_15
unknown

Not on your lists

comp(7118..7408)
-----------------
DNA (291bp)
protein (97aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6970_16
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(7484..7945)
-----------------
DNA (462bp)
protein (154aa)
YbaK/prolyl-tRNA synthetase associated region n=1 Tax=Mesotoga sp. PhosAc3 RepID=N1JMB2_9THEM
regulatory protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsphigho2_01_scaffold_6970_17
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(7945..8409)
-----------------
DNA (465bp)
protein (155aa)
Transcriptional regulator, lrp family n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8C4_9ARCH id=5103635 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
AsnC family transcriptional regulator Tax=RBG_13_Woesearchaeota_36_6_curated
Transcriptional regulator, lrp family
rifcsphigho2_01_scaffold_6970_18
unknown

Not on your lists

8535..8831
-----------------
DNA (297bp)
protein (99aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6970_19
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

8933..10231
-----------------
DNA (1299bp)
protein (433aa)
prephenate dehydrogenase (NADP(+)) (EC:1.3.1.13)
NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YFB3_9SPHI
NADP oxidoreductase coenzyme F420-dependent Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
rifcsphigho2_01_scaffold_6970_20
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(10232..11305)
-----------------
DNA (1074bp)
protein (358aa)
cell division control protein 6 Tax=CG_Woesearch_02
ORC1-type DNA replication protein id=5800648 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ORC1-type DNA replication protein
rifcsphigho2_01_scaffold_6970_21

Not on your lists

11389..12246
-----------------
DNA (858bp)
protein (286aa)
sdr-2; glucose/ribitol dehydrogenase family protein (EC:1.1.1.-)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U7A9_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKN27549.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rifcsphigho2_01_scaffold_6970_22
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(12243..13946)
-----------------
DNA (1704bp)
protein (568aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003760ED3
PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
PHP domain-containing protein
rifcsphigho2_01_scaffold_6970_23
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

14172..14426
-----------------
DNA (255bp)
protein (85aa)
id=5046822 Tax=CG_Woesearch_01
id=5046822 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_01_scaffold_6970_24
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14420..15442)
-----------------
DNA (1023bp)
protein (341aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase {ECO:0000313|EMBL:AEE96546.1}; EC=2.5.1.54 {ECO:0000313|EMBL:AEE96546.1};; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacte
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZX89_MAHA5
rifcsphigho2_01_scaffold_6970_25
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15445..16107)
-----------------
DNA (663bp)
protein (221aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03785 3-dehydroquinate dehydratase I [EC:4.2.1.10] Tax=RBG_13_Deltaproteobacteria_47_9_curated
3-dehydroquinate dehydratase I (EC:4.2.1.10)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00036F08B1
rifcsphigho2_01_scaffold_6970_26
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(16104..17210)
-----------------
DNA (1107bp)
protein (369aa)
3-dehydroquinate synthase (EC:4.2.3.4) Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] id=14425196 bin=bin1_lowGC species=Clostridium sp. CAG:264 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
3-dehydroquinate synthase (EC:4.2.3.4)
rifcsphigho2_01_scaffold_6970_27
unknown

Not on your lists

comp(17242..17487)
-----------------
DNA (246bp)
protein (82aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6970_28
CG_OP9-01, Atribacteria, Bacteria

Not on your lists

17689..18792
-----------------
DNA (1104bp)
protein (368aa)
FolC bifunctional protein; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=CG_OP9-01
FolC bifunctional protein n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S229_THEOJ
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
rifcsphigho2_01_scaffold_6970_29
unknown

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comp(18784..19194)
-----------------
DNA (411bp)
protein (137aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6970_30
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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comp(19191..20459)
-----------------
DNA (1269bp)
protein (423aa)
serS; seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000255|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00176}; Short=SerRS {ECO:0000255|HAMAP-Rule:MF_0
Serine--tRNA ligase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=SYS_UNCMA
Displaying items 1-30 of 33 in total

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