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rifcsphigho2_01_scaffold_17006

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_17006_1
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

3..719
-----------------
DNA (717bp)
protein (239aa)
hypothetical membrane protein Tax=RBG_16_Zixibacteria_50_21_curated
hypothetical protein id=15194302 bin=GWC2_NOV_55_46 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
membrane protein
rifcsphigho2_01_scaffold_17006_2
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


comp(750..1352)
-----------------
DNA (603bp)
protein (201aa)
30S ribosomal protein S2 {ECO:0000313|EMBL:KKR78533.1}; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 id=5050177 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S2
rifcsphigho2_01_scaffold_17006_3
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

1632..1895
-----------------
DNA (264bp)
protein (88aa)
Transcription regulator, SpoVT/AbrB family id=4924043 bin=PER_GWC2_41_7 species=Thermococcus kodakarensis genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Transcriptional regulator, AbrB family Tax=AR11
transcription regulator SpoVT/AbrB family
rifcsphigho2_01_scaffold_17006_4
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

1892..2341
-----------------
DNA (450bp)
protein (150aa)
Putative uncharacterized protein id=4924042 bin=PER_GWC2_41_7 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
twitching motility protein PilT
rifcsphigho2_01_scaffold_17006_5
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

2521..2778
-----------------
DNA (258bp)
protein (86aa)
hypothetical protein
id=5046763 Tax=RBG_13_Woesearchaeota_36_6_curated
id=5046763 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_01_scaffold_17006_6

Not on your lists

2796..3800
-----------------
DNA (1005bp)
protein (335aa)
DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
DNA repair and recombination protein RadA; K04483 DNA repair protein RadA id=5046762 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RecA/RadA recombinase
rifcsphigho2_01_scaffold_17006_7

Not on your lists

3840..4352
-----------------
DNA (513bp)
protein (171aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] id=5046760 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1579365 species="A
2'-5' RNA ligase
rifcsphigho2_01_scaffold_17006_8
unknown

Not on your lists

4416..4535
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17006_9

Not on your lists

comp(4536..5525)
-----------------
DNA (990bp)
protein (330aa)
OB-fold tRNA/helicase-type nucleic acid binding protein; K07466 replication factor A1 id=5046768 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Replication factor A1 {ECO:0000313|EMBL:KHO45956.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Nucleic acid binding OB-fold tRNA/helicase-type
rifcsphigho2_01_scaffold_17006_10
Synechocystis sp. PCC 6803, Synechocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(5565..6698)
-----------------
DNA (1134bp)
protein (378aa)
Lipoprotein NlpD n=7 Tax=Bacteria RepID=L8APH9_BACIU
nlpD; lipoprotein NlpD
Lipoprotein NlpD {ECO:0000313|EMBL:BAA18621.1}; TaxID=1111708 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechocystis.;" source="Synechocystis sp. (strain PCC 6803 / Kazu
rifcsphigho2_01_scaffold_17006_11
unknown

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comp(6685..6834)
-----------------
DNA (150bp)
protein (50aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17006_12
unknown

Not on your lists

comp(6827..7309)
-----------------
DNA (483bp)
protein (161aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17006_13
unknown

Not on your lists

comp(7306..7779)
-----------------
DNA (474bp)
protein (158aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17006_14
unknown

Not on your lists

comp(7772..8050)
-----------------
DNA (279bp)
protein (93aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17006_15
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(8179..8670)
-----------------
DNA (492bp)
protein (164aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
rifcsphigho2_01_scaffold_17006_16
unknown

Not on your lists

comp(8720..9337)
-----------------
DNA (618bp)
protein (206aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17006_17
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(9334..9624)
-----------------
DNA (291bp)
protein (97aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
rifcsphigho2_01_scaffold_17006_18
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(9614..10270)
-----------------
DNA (657bp)
protein (219aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
rifcsphigho2_01_scaffold_17006_19
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(10267..10422)
-----------------
DNA (156bp)
protein (52aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
rifcsphigho2_01_scaffold_17006_20
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(10458..11375)
-----------------
DNA (918bp)
protein (306aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
rifcsphigho2_01_scaffold_17006_21
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(11357..12838)
-----------------
DNA (1482bp)
protein (494aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
rifcsphigho2_01_scaffold_17006_22
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(12835..12966)
-----------------
DNA (132bp)
protein (44aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
rifcsphigho2_01_scaffold_17006_23
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(13011..13508)
-----------------
DNA (498bp)
protein (166aa)
hypothetical protein
Putative uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
Putative uncharacterized protein id=5045332 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_17006_24
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(13639..13971)
-----------------
DNA (333bp)
protein (111aa)
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
Uncharacterized protein id=5049658 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_01_scaffold_17006_25
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(13975..14235)
-----------------
DNA (261bp)
protein (87aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
rifcsphigho2_01_scaffold_17006_26
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(14309..14536)
-----------------
DNA (228bp)
protein (76aa)
Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
rifcsphigho2_01_scaffold_17006_27
R_OP11_47_10, Microgenomates, Bacteria

Not on your lists

comp(14533..15705)
-----------------
DNA (1173bp)
protein (391aa)
extracellular alkaline serine protease; K01342 subtilisin [EC:3.4.21.62] Tax=RIFCSPLOWO2_01_FULL_OP11_47_10_curated
peptidase S8/S53 subtilisin kexin sedolisin; K01342 subtilisin [EC:3.4.21.62] id=5041629 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
epr; minor extracellular protease Epr (EC:3.4.21.-)
rifcsphigho2_01_scaffold_17006_28
unknown

Not on your lists

16125..17207
-----------------
DNA (1083bp)
protein (361aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17006_29
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

17208..17846
-----------------
DNA (639bp)
protein (213aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PZV6_METMA
hypothetical protein Tax=RBG_13_RIF_OD1_07_36_15_curated
hypothetical protein
rifcsphigho2_01_scaffold_17006_30
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(17848..18423)
-----------------
DNA (576bp)
protein (192aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] Tax=RBG_13_Woesearchaeota_36_6_curated
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A id=5800238 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Displaying 30 items

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