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rifcsphigho2_01_scaffold_28393

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_28393_1

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comp(1..702)
-----------------
DNA (702bp)
protein (234aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5042300 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L3
rifcsphigho2_01_scaffold_28393_2

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comp(937..2235)
-----------------
DNA (1299bp)
protein (433aa)
Uncharacterized protein id=5049175 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45166.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
glutamate--cysteine ligase GCS2
rifcsphigho2_01_scaffold_28393_3

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2438..2707
-----------------
DNA (270bp)
protein (90aa)
Putative uncharacterized protein id=5799528 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF60859.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
AbrB family transcriptional regulator
rifcsphigho2_01_scaffold_28393_4

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2701..2943
-----------------
DNA (243bp)
protein (81aa)
hypothetical protein id=5048510 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45544.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_01_scaffold_28393_5

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comp(2962..4488)
-----------------
DNA (1527bp)
protein (509aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037B8391
Uncharacterized protein {ECO:0000313|EMBL:KHO51211.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein
rifcsphigho2_01_scaffold_28393_6
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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4546..4890
-----------------
DNA (345bp)
protein (115aa)
toprim domain protein Tax=RBG_13_Woesearchaeota_36_6_curated
TOPRIM domain-containing protein id=5050201 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Toprim protein
rifcsphigho2_01_scaffold_28393_7
unknown

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4921..5487
-----------------
DNA (567bp)
protein (189aa)

This feature has no annotations

rifcsphigho2_01_scaffold_28393_8
unknown

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comp(5489..6004)
-----------------
DNA (516bp)
protein (172aa)

This feature has no annotations

rifcsphigho2_01_scaffold_28393_9
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(6001..8163)
-----------------
DNA (2163bp)
protein (721aa)
Hef nuclease; K10896 fanconi anemia group M protein Tax=CG_Woesearch_02
Hef nuclease; K10896 fanconi anemia group M protein id=5041753 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ERCC4-like helicase
rifcsphigho2_01_scaffold_28393_10
Elusimicrobium minutum, Elusimicrobium, Elusimicrobiales, Elusimicrobia, Elusimicrobia, Bacteria

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8252..8908
-----------------
DNA (657bp)
protein (219aa)
endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) l
hypothetical protein id=8267055 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
rifcsphigho2_01_scaffold_28393_11
unknown

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comp(8905..9411)
-----------------
DNA (507bp)
protein (169aa)

This feature has no annotations

rifcsphigho2_01_scaffold_28393_12
unknown

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comp(9438..9599)
-----------------
DNA (162bp)
protein (54aa)

This feature has no annotations

rifcsphigho2_01_scaffold_28393_13
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9632..10357)
-----------------
DNA (726bp)
protein (242aa)
Putative acetyltransferase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2V2_UNCMA
putative acetyltransferase
Putative acetyltransferase {ECO:0000313|EMBL:CAJ37291.1}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryz
rifcsphigho2_01_scaffold_28393_14
R_RIF_OD1_07_48_16, RIF-OD1-7, Parcubacteria, Bacteria

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comp(10391..10747)
-----------------
DNA (357bp)
protein (119aa)
hypothetical protein
id=5103514 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_48_16_curated
id=5103514 bin=GW2011_AR20_complete species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_01_scaffold_28393_15

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comp(10744..11076)
-----------------
DNA (333bp)
protein (111aa)
S-layer protein (Fragment) n=1 Tax=uncultured bacterium (gcode 4) RepID=K2F6M2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO49679.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
Displaying 15 items

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