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rifcsphigho2_01_scaffold_40013

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_40013_1

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comp(3..1199)
-----------------
DNA (1197bp)
protein (399aa)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-A02 RepID=UPI0003627C0A
Uncharacterized protein {ECO:0000313|EMBL:KKN53900.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
rifcsphigho2_01_scaffold_40013_2
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

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comp(1236..1658)
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI000374DB56
hypothetical protein Tax=RBG_13_Aminicenantes_59_9_curated
Archease
rifcsphigho2_01_scaffold_40013_3
unknown

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comp(1692..1979)
-----------------
DNA (288bp)
protein (96aa)

This feature has no annotations

rifcsphigho2_01_scaffold_40013_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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2078..2806
-----------------
DNA (729bp)
protein (243aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Chaperone SurA n=1 Tax=Aeromonas veronii AER39 RepID=K1HXG6_9GAMM
peptidylprolyl cis-trans isomerase SurA
rifcsphigho2_01_scaffold_40013_5
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(2803..4056)
-----------------
DNA (1254bp)
protein (418aa)
DNA primase Tax=CG_Woesearch_02
DNA primase id=5048471 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_01_scaffold_40013_6
unknown

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4554..5015
-----------------
DNA (462bp)
protein (154aa)

This feature has no annotations

rifcsphigho2_01_scaffold_40013_7
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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5042..5920
-----------------
DNA (879bp)
protein (293aa)
hypothetical protein; K10844 DNA excision repair protein ERCC-2 [EC:3.6.4.12] Tax=RBG_13_Woesearchaeota_36_6_curated
ATP dependent helicase id=5799755 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ATP dependent helicase
rifcsphigho2_01_scaffold_40013_8
CG_Woesearch_01, Woesearchaeota, Archaea

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5946..6764
-----------------
DNA (819bp)
protein (273aa)
DNA repair helicase rad3 Tax=CG_Woesearch_01
ATP dependent helicase id=5799755 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ATP dependent helicase
rifcsphigho2_01_scaffold_40013_9
CG_Woesearch_01, Woesearchaeota, Archaea

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6932..7321
-----------------
DNA (390bp)
protein (130aa)
id=5799756 Tax=CG_Woesearch_01
id=5799756 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_01_scaffold_40013_10
CG_Woesearch_01, Woesearchaeota, Archaea

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7542..8744
-----------------
DNA (1203bp)
protein (401aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000375F3AE
hypothetical protein Tax=CG_Woesearch_01
hypothetical protein
rifcsphigho2_01_scaffold_40013_11

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8810..9655
-----------------
DNA (846bp)
protein (282aa)
Uncharacterized protein n=1 Tax=uncultured archaeon RepID=Q6MZD0_9ARCH
Marine sediment metagenome DNA, contig: S01H4_L01941 {ECO:0000313|EMBL:GAG61847.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
rifcsphigho2_01_scaffold_40013_12

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9694..11151
-----------------
DNA (1458bp)
protein (486aa)
glycyl-tRNA synthetase (EC:6.1.1.14)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037B52A0
Uncharacterized protein {ECO:0000313|EMBL:KKM08006.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rifcsphigho2_01_scaffold_40013_13

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11155..13596
-----------------
DNA (2442bp)
protein (814aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017576}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017588};; Alanyl-tRNA synthetase {ECO:0000256
alaS; Alanine-tRNA ligase (EC:6.1.1.7)
Alanyl-tRNA synthetase n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QFB4_9EURY
rifcsphigho2_01_scaffold_40013_14
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(13679..14917)
-----------------
DNA (1239bp)
protein (413aa)
hypothetical protein Tax=CG_Woesearch_02
Uncharacterized protein id=5799713 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_01_scaffold_40013_15
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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comp(14943..15875)
-----------------
DNA (933bp)
protein (311aa)
ornithine carbamoyltransferase family protein; K00611 ornithine carbamoyltransferase [EC:2.1.3.3] Tax=GWF2_Lentisphaerae_57_35_curated
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase family protein id=4214053 bin=GWF2_Lentisphaerae_57_35 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
rifcsphigho2_01_scaffold_40013_16
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(15868..17208)
-----------------
DNA (1341bp)
protein (447aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_0000
Argininosuccinate lyase n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R7T2_SPISS rbh
argininosuccinate lyase
rifcsphigho2_01_scaffold_40013_17
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(17205..17738)
-----------------
DNA (534bp)
protein (178aa)
argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
Argininosuccinate synthase n=1 Tax=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) RepID=ASSY_THENN
argininosuccinate synthase
Displaying 17 items

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