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rifcsphigho2_01_scaffold_32918

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_32918_1
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

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comp(1..999)
-----------------
DNA (999bp)
protein (333aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WLT2_9EURY rbh
D-isomer specific 2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
D-isomer specific 2-hydroxyacid dehydrogenase
rifcsphigho2_01_scaffold_32918_2
GWB1_OD1_43_8, Parcubacteria, Bacteria

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comp(996..1976)
-----------------
DNA (981bp)
protein (327aa)
rsd:TGRD_315 transketolase ; K00615 transketolase [EC:2.2.1.1] id=35957 bin=ACD30 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=ACD30 organism_group=OP11 (Microgenomates) organism_desc=OP11
Transketolase central region {ECO:0000313|EMBL:KKT20990.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
transketolase
rifcsphigho2_01_scaffold_32918_3
GWA1_OD1_44_24_partial, Wolfebacteria, Parcubacteria, Bacteria

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comp(1976..2833)
-----------------
DNA (858bp)
protein (286aa)
transketolase n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B6E618
Transketolase domain protein Tax=GWA1_OD1_44_24_partial
hypothetical protein
rifcsphigho2_01_scaffold_32918_4
unknown

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3085..3258
-----------------
DNA (174bp)
protein (58aa)

This feature has no annotations

rifcsphigho2_01_scaffold_32918_5
RHI_OD1_Uhrbacteria_60_25, Uhrbacteria, Parcubacteria, Bacteria

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comp(3260..3496)
-----------------
DNA (237bp)
protein (79aa)
glutaredoxin-like protein Tax=RIFCSPHIGHO2_12_FULL_OD1_Uhrbacteria_60_25_curated
glutaredoxin-like protein
glutaredoxin-like protein id=5241603 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_32918_6
R_OD1_Falkowbacteria_44_11, Falkowbacteria, Parcubacteria, Bacteria

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comp(3565..3951)
-----------------
DNA (387bp)
protein (129aa)
blue (type 1) copper domain protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Falkowbacteria_44_11_curated
rifcsphigho2_01_scaffold_32918_7
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(3948..4475)
-----------------
DNA (528bp)
protein (176aa)
ZPR1-related zinc finger protein; K06874 zinc finger protein Tax=RBG_13_Woesearchaeota_36_6_curated
ZPR1-like zinc finger protein; K06874 zinc finger protein id=5049199 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ZPR1-like protein zinc finger protein
rifcsphigho2_01_scaffold_32918_8
Methanobacterium lacus, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(4507..5217)
-----------------
DNA (711bp)
protein (237aa)
Uncharacterized protein n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0T988_METSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ09839.1}; TaxID=877455 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacter
rifcsphigho2_01_scaffold_32918_9

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comp(5256..6686)
-----------------
DNA (1431bp)
protein (477aa)
metG_[H]; Methionyl-tRNA synthetase (EC:6.1.1.10)
Methionyl-tRNA synthetase, class Ia {ECO:0000313|EMBL:KHO52762.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Methionine--tRNA ligase id=5799554 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_01_scaffold_32918_10
CG_Woesearch_03, Woesearchaeota, Archaea

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comp(6812..7378)
-----------------
DNA (567bp)
protein (189aa)
protein containing C-terminal region/beta chain of methionyl-tRNA synthetase (EC:6.1.1.10) Tax=CG_Woesearch_03
metG; methionine--tRNA ligase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15 str. 01-0170 RepID=V2ITU7_SALDZ
Suspect SCG annotation. See neighboring gene [rifcsphigho2_01_scaffold_32918_9].
rifcsphigho2_01_scaffold_32918_11
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(7419..8105)
-----------------
DNA (687bp)
protein (229aa)
id=5048829 Tax=CG_Woesearch_01
id=5048829 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_01_scaffold_32918_12

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8285..10282
-----------------
DNA (1998bp)
protein (666aa)
id=5045807 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46420.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_01_scaffold_32918_13
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

10283..10852
-----------------
DNA (570bp)
protein (190aa)
type II/IV secretion system ATPase; K07332 archaeal flagellar protein FlaI Tax=CG_Woesearch_01
type II/IV secretion system ATPase; K07332 archaeal flagellar protein FlaI id=5045808 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Secretory protein kinase
Displaying 13 items

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