ggKbase home page

rifcsphigho2_01_scaffold_20413

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_20413_1
Robiginitalea biformata, Robiginitalea, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1..348
-----------------
DNA (348bp)
protein (116aa)
Ribose-5-phosphate isomerase B n=1 Tax=Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) RepID=A4CJM3_ROBBH
ribose-5-phosphate isomerase B
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EAR17131.1}; TaxID=313596 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Robiginitalea.;" source="Robiginitalea
rifcsphigho2_01_scaffold_20413_2
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

345..986
-----------------
DNA (642bp)
protein (214aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=5046257 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpe; ribulose-phosphate 3-epimerase Rpe (EC:5.1.3.1)
rifcsphigho2_01_scaffold_20413_3

Not on your lists

979..1788
-----------------
DNA (810bp)
protein (270aa)
Transketolase id=5800711 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Transketolase {ECO:0000313|EMBL:AJF62041.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
transketolase domain-containing protein
rifcsphigho2_01_scaffold_20413_4
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

1785..2750
-----------------
DNA (966bp)
protein (322aa)
Uncharacterized protein id=5800710 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein Tax=AR15
transketolase
rifcsphigho2_01_scaffold_20413_5
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

Not on your lists

2852..3961
-----------------
DNA (1110bp)
protein (370aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] Tax=RBG_13_Spirochaetes_68_11_curated
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase id=4167392 bin=GWF2_Lentisphaerae_38_69 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
rifcsphigho2_01_scaffold_20413_6
Limnoraphis robusta, Limnoraphis, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3963..5372
-----------------
DNA (1410bp)
protein (470aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rul
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WHS3_9SYNE
rifcsphigho2_01_scaffold_20413_7
Cyanothece sp. CCY0110, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

5384..5980
-----------------
DNA (597bp)
protein (199aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate is
3-isopropylmalate dehydratase small subunit n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IRP0_9CHRO
leuD; isopropylmalate isomerase small subunit
rifcsphigho2_01_scaffold_20413_8

Not on your lists

comp(5981..7075)
-----------------
DNA (1095bp)
protein (365aa)
Chaperone protein DnaJ {ECO:0000313|EMBL:KHO53481.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Chaperone protein DnaJ id=5800476 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
chaperone protein dnaJ
rifcsphigho2_01_scaffold_20413_9

Not on your lists

comp(7075..8685)
-----------------
DNA (1611bp)
protein (537aa)
thermosome id=5043657 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Thermosome {ECO:0000313|EMBL:KHO46633.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Thermosome, chaperonin Cpn60/TCP-1
rifcsphigho2_01_scaffold_20413_10
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(8686..9366)
-----------------
DNA (681bp)
protein (227aa)
Chaperone protein DnaK id=5799568 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Chaperone protein DnaK Tax=AR15
dnaK; molecular chaperone DnaK
Displaying 10 items

View Taxonomy