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rifcsphigho2_01_scaffold_19807

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_19807_1
AR10, Diapherotrites, DPANN, Archaea

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comp(2..388)
-----------------
DNA (387bp)
protein (129aa)
family 2 glycosyl transferase
family 2 glycosyl transferase id=5241081 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
family 2 glycosyl transferase Tax=AR10
rifcsphigho2_01_scaffold_19807_2
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(378..863)
-----------------
DNA (486bp)
protein (162aa)
Glycosyltransferase 28-like protein {ECO:0000313|EMBL:CEN25968.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium s
EpsH protein
EpsH protein id=5241045 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_19807_3

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comp(863..1309)
-----------------
DNA (447bp)
protein (149aa)
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase {ECO:0000313|EMBL:KHO55812.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
cpsF; polysaccharide biosynthesis protein CpsF
cpsF; polysaccharide biosynthesis protein CpsF id=5241044 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_19807_4

Not on your lists

comp(1316..2287)
-----------------
DNA (972bp)
protein (324aa)
UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase {ECO:0000313|EMBL:KHO55811.1}; EC=2.7.8.15 {ECO:0000313|EMBL:KHO55811.1};; TaxID=1579379 species="Archaea.;" source="ar
UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (EC:2.7.8.15)
glycosyl transferase family protein; K01001 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15] id=5241043 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_19807_5
AR10, Diapherotrites, DPANN, Archaea

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comp(2316..4394)
-----------------
DNA (2079bp)
protein (693aa)
Oligosaccharyl transferase, STT3 subunit
Oligosaccharyl transferase, STT3 subunit id=5241042 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Oligosaccharyl transferase, STT3 subunit Tax=AR10
rifcsphigho2_01_scaffold_19807_6
unknown

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4567..5682
-----------------
DNA (1116bp)
protein (372aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19807_7

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comp(5850..6545)
-----------------
DNA (696bp)
protein (232aa)
transcription initiation factor TFIID TATA-box-binding protein
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA-box factor {E
transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5241036 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_19807_8

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6816..7118
-----------------
DNA (303bp)
protein (101aa)
50S ribosomal protein L21e n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RL21_METKA
50S ribosomal protein L21e {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00016423}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
Ribosomal protein L21e
rifcsphigho2_01_scaffold_19807_9

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7115..7453
-----------------
DNA (339bp)
protein (113aa)
DNA-directed RNA polymerase subunit F {ECO:0000313|EMBL:KHO55807.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO55807.1};; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
hypothetical protein; K03051 DNA-directed RNA polymerase subunit F [EC:2.7.7.6] id=5241025 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein
rifcsphigho2_01_scaffold_19807_10

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7486..8073
-----------------
DNA (588bp)
protein (196aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55806.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
hypothetical protein
hypothetical protein; K07572 putative nucleotide binding protein id=5241024 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_19807_11
CG_Micra_06, Micraarchaeota, Archaea

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8116..8673
-----------------
DNA (558bp)
protein (186aa)
LemA family protein n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TA84_METSL
hypothetical protein Tax=CG_Micra_06
LemA family protein
rifcsphigho2_01_scaffold_19807_12
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

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8720..9625
-----------------
DNA (906bp)
protein (302aa)
heat shock protein HtpX; K03799 heat shock protein HtpX [EC:3.4.24.-] id=24520670 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
heat shock protein HtpX (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=RBG_16_Aminicenantes_63_16_curated
heat shock protein HtpX (EC:3.4.24.-)
rifcsphigho2_01_scaffold_19807_13

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9636..10448
-----------------
DNA (813bp)
protein (271aa)
ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase (EC:2.1.1.182)
ksgA; dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] id=5241023 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
16S rRNA (Adenine1518-N6/adenine1519-N6)-dimethyltransferase {ECO:0000313|EMBL:AJF60014.1}; EC=2.1.1.182 {ECO:0000313|EMBL:AJF60014.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.
rifcsphigho2_01_scaffold_19807_14

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comp(10452..11093)
-----------------
DNA (642bp)
protein (214aa)
thymidine phosphorylase (EC:2.4.2.4)
Thymidine phosphorylase {ECO:0000313|EMBL:AJF60012.1}; EC=2.4.2.4 {ECO:0000313|EMBL:AJF60012.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
AMP phosphohydrolase; K00758 thymidine phosphorylase [EC:2.4.2.4] id=5241021 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_19807_15
AR10, Diapherotrites, DPANN, Archaea

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comp(11113..11964)
-----------------
DNA (852bp)
protein (284aa)
thymidine phosphorylase (EC:2.4.2.4)
AMP phosphohydrolase; K00758 thymidine phosphorylase [EC:2.4.2.4] id=5241021 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
AMP phosphohydrolase; K00758 thymidine phosphorylase [EC:2.4.2.4] Tax=AR10
rifcsphigho2_01_scaffold_19807_16
AR10, Diapherotrites, DPANN, Archaea

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12184..12543
-----------------
DNA (360bp)
protein (120aa)
hypothetical protein
id=5240727 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
rifcsphigho2_01_scaffold_19807_17
unknown

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12604..13038
-----------------
DNA (435bp)
protein (145aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19807_18
unknown

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comp(13001..13300)
-----------------
DNA (300bp)
protein (100aa)

This feature has no annotations

rifcsphigho2_01_scaffold_19807_19

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comp(13343..14053)
-----------------
DNA (711bp)
protein (237aa)
Orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] id=5046258 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Orotidine-5'-phosphate decarboxylase {ECO:0000313|EMBL:KHO46059.1}; EC=4.1.1.23 {ECO:0000313|EMBL:KHO46059.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
rifcsphigho2_01_scaffold_19807_20
AR10, Diapherotrites, DPANN, Archaea

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comp(14147..14746)
-----------------
DNA (600bp)
protein (200aa)
uridine monophosphate synthetase (EC:4.1.1.23 2.4.2.10)
orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase (EC:4.1.1.23 2.4.2.10); K13421 uridine monophosphate synthetase [EC:2.4.2.10 4.1.1.23] id=5241017 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase (EC:4.1.1.23 2.4.2.10); K13421 uridine monophosphate synthetase [EC:2.4.2.10 4.1.1.23] Tax=AR10
rifcsphigho2_01_scaffold_19807_21
AR10, Diapherotrites, DPANN, Archaea

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comp(14694..16013)
-----------------
DNA (1320bp)
protein (440aa)
dihydroorotase (EC:3.5.2.3)
dihydroorotase, multifunctional complex type; K01465 dihydroorotase [EC:3.5.2.3] id=5241016 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
dihydroorotase, multifunctional complex type; K01465 dihydroorotase [EC:3.5.2.3] Tax=AR10
rifcsphigho2_01_scaffold_19807_22
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16014..16757)
-----------------
DNA (744bp)
protein (248aa)
pyrK; dihydroorotate dehydrogenase electron transfer subunit PyrK (EC:1.3.98.1)
PyrK: dihydroorotate dehydrogenase electron transfer subunit {ECO:0000313|EMBL:CCK78462.1}; EC=1.3.3.1 {ECO:0000313|EMBL:CCK78462.1};; TaxID=651182 species="Bacteria; Proteobacteria; Deltaproteobacter
PyrK: dihydroorotate dehydrogenase electron transfer subunit n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NHL2_DESTT
Displaying 22 items

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