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rifcsphigho2_01_scaffold_5387

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_5387_1
AR10, Diapherotrites, DPANN, Archaea

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comp(1..117)
-----------------
DNA (117bp)
protein (39aa)
hypothetical protein
hypothetical protein id=5241033 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein Tax=AR10
rifcsphigho2_01_scaffold_5387_2
R_RIF_OD1_08_40_12b, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

247..1938
-----------------
DNA (1692bp)
protein (564aa)
thyA; thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated
thymidylate synthase; K00560 thymidylate synthase [EC:2.1.1.45] id=5044059 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_01_scaffold_5387_3
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(1941..2420)
-----------------
DNA (480bp)
protein (160aa)
nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=AR10
nucleoside-diphosphate kinase (EC:2.7.4.6)
nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] id=5241393 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_5387_4

Not on your lists


comp(2422..2622)
-----------------
DNA (201bp)
protein (67aa)
50S ribosomal protein L24; K02896 large subunit ribosomal protein L24e id=5045789 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L24e {ECO:0000313|EMBL:KHO46402.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
LSU ribosomal protein L24E
rifcsphigho2_01_scaffold_5387_5

Not on your lists


comp(2625..2846)
-----------------
DNA (222bp)
protein (74aa)
30S ribosomal protein S28, small subunit ribosomal protein S28e
rps28e; 30S ribosomal protein S28; K02979 small subunit ribosomal protein S28e id=5241391 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S28e {ECO:0000256|HAMAP-Rule:MF_00292}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5387_6

Not on your lists


comp(2865..3272)
-----------------
DNA (408bp)
protein (136aa)
add45; ribosomal protein L7Ae/L30e/S12e/Glarge subunit ribosomal protein L7Ae
ribosomal protein L7Ae/L30e/S12e/Gadd45; K02936 large subunit ribosomal protein L7Ae id=5241390 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L7Ae {ECO:0000256|HAMAP-Rule:MF_00326}; Ribosomal protein L8e {ECO:0000256|HAMAP-Rule:MF_00326}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5387_7
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(3369..5090)
-----------------
DNA (1722bp)
protein (574aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] id=5241388 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=AR10
rifcsphigho2_01_scaffold_5387_8
unknown

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comp(5128..5391)
-----------------
DNA (264bp)
protein (88aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5387_9
unknown

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comp(5401..5586)
-----------------
DNA (186bp)
protein (62aa)

This feature has no annotations

rifcsphigho2_01_scaffold_5387_10
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(5598..6359)
-----------------
DNA (762bp)
protein (254aa)
hypothetical protein
hypothetical protein id=5241387 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein Tax=AR10
rifcsphigho2_01_scaffold_5387_11
Methanobacterium sp. MB1, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6514..6987)
-----------------
DNA (474bp)
protein (158aa)
Putative membrane protein n=1 Tax=Methanobacterium sp. MB1 RepID=U6EB13_9EURY
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CDG64193.1}; TaxID=1379702 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobac
rifcsphigho2_01_scaffold_5387_12
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(7105..7737)
-----------------
DNA (633bp)
protein (211aa)
Uncharacterized protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1P2X0_DESSD
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
hypothetical protein
rifcsphigho2_01_scaffold_5387_13
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7773..8585)
-----------------
DNA (813bp)
protein (271aa)
MEMO1 family protein MA_0601 n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Y601_METAC
MEMO1 family protein MSTHC_1168 {ECO:0000256|HAMAP-Rule:MF_00055}; TaxID=1434121 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Meth
hypothetical protein
rifcsphigho2_01_scaffold_5387_14
AR10, Diapherotrites, DPANN, Archaea

Not on your lists


comp(8605..9459)
-----------------
DNA (855bp)
protein (285aa)
small subunit ribosomal protein S2
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 id=5241386 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=AR10
rifcsphigho2_01_scaffold_5387_15
AR10, Diapherotrites, DPANN, Archaea

Not on your lists


comp(9474..9671)
-----------------
DNA (198bp)
protein (66aa)
DNA-directed RNA polymerase subunit N (EC:2.7.7.6)
DNA-directed RNA polymerase subunit N; K03058 DNA-directed RNA polymerase subunit N [EC:2.7.7.6] id=5241385 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
DNA-directed RNA polymerase subunit N; K03058 DNA-directed RNA polymerase subunit N [EC:2.7.7.6] Tax=AR10
rifcsphigho2_01_scaffold_5387_16

Not on your lists


comp(9689..10123)
-----------------
DNA (435bp)
protein (145aa)
small subunit ribosomal protein S9
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=5241384 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S9 {ECO:0000256|RuleBase:RU003817}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5387_17
AR10, Diapherotrites, DPANN, Archaea

Not on your lists


comp(10120..10545)
-----------------
DNA (426bp)
protein (142aa)
large subunit ribosomal protein L13
ribosomal protein L13; K02871 large subunit ribosomal protein L13 id=5241383 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=AR10
rifcsphigho2_01_scaffold_5387_18

Not on your lists


comp(10551..10919)
-----------------
DNA (369bp)
protein (123aa)
50S ribosomal protein L18e, large subunit ribosomal protein L18e
rpl18E; 50S ribosomal protein L18e; K02883 large subunit ribosomal protein L18e id=5241382 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L18e {ECO:0000256|RuleBase:RU000573}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5387_19
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(11240..11989)
-----------------
DNA (750bp)
protein (250aa)
DNA-directed RNA polymerase subunit D (EC:2.7.7.6)
DNA-directed RNA polymerase subunit D (EC:2.7.7.6); K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] id=5241381 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
DNA-directed RNA polymerase subunit D (EC:2.7.7.6); K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=AR10
rifcsphigho2_01_scaffold_5387_20

Not on your lists


comp(12085..12477)
-----------------
DNA (393bp)
protein (131aa)
small subunit ribosomal protein S11
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 id=5241380 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5387_21

Not on your lists


comp(12479..13087)
-----------------
DNA (609bp)
protein (203aa)
30S ribosomal protein S4, small subunit ribosomal protein S4
rps4p; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=5241379 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5387_22

Not on your lists


comp(13200..13763)
-----------------
DNA (564bp)
protein (188aa)
small subunit ribosomal protein S13
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=5241378 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5387_23

Not on your lists


comp(13794..14015)
-----------------
DNA (222bp)
protein (74aa)
50S ribosomal protein L14
ribosomal protein L14; K02875 large subunit ribosomal protein L14e id=5241377 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Large subunit ribosomal protein L14e {ECO:0000313|EMBL:AJF60368.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5387_24
Thermococcus sp. AM4, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(14032..14508)
-----------------
DNA (477bp)
protein (159aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00239, ECO:0000256|SAAS:SAAS00054797}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00239};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00239, ECO:0000256|SAAS:SAAS0005
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14]
Cytidylate kinase n=1 Tax=Thermococcus sp. AM4 RepID=B7R334_9EURY
rifcsphigho2_01_scaffold_5387_25

Not on your lists

comp(14511..14852)
-----------------
DNA (342bp)
protein (114aa)
large subunit ribosomal protein L34e
ribosomal protein L34e; K02915 large subunit ribosomal protein L34e id=5241376 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L34e {ECO:0000256|HAMAP-Rule:MF_00349}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsphigho2_01_scaffold_5387_26
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(14845..15339)
-----------------
DNA (495bp)
protein (165aa)
hypothetical protein
hypothetical protein id=5241375 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein Tax=AR10
rifcsphigho2_01_scaffold_5387_27

Not on your lists

comp(15374..16744)
-----------------
DNA (1371bp)
protein (457aa)
preprotein translocase subunit SecY
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5241374 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; Protein transport protein SEC61 subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=157937
rifcsphigho2_01_scaffold_5387_28

Not on your lists


comp(16741..17190)
-----------------
DNA (450bp)
protein (150aa)
50S ribosomal protein L15, large subunit ribosomal protein L15
rpl15p; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 id=5241373 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rifcsphigho2_01_scaffold_5387_29

Not on your lists


comp(17192..17659)
-----------------
DNA (468bp)
protein (156aa)
50S ribosomal protein L30P n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD79_METIK
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
50S ribosomal protein L30
rifcsphigho2_01_scaffold_5387_30

Not on your lists


comp(17656..18372)
-----------------
DNA (717bp)
protein (239aa)
30S ribosomal protein S5, small subunit ribosomal protein S5
rps5p; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=5241371 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Small subunit ribosomal protein S5 {ECO:0000313|EMBL:KHO55773.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
Displaying items 1-30 of 56 in total

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