ggKbase home page

rifcsphigho2_01_scaffold_6709

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsphigho2_01_scaffold_6709_1
unknown

Not on your lists

comp(3..299)
-----------------
DNA (297bp)
protein (99aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6709_2

Not on your lists

comp(474..1535)
-----------------
DNA (1062bp)
protein (354aa)
replication factor C large subunit; K04800 replication factor C large subunit id=5042098 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
replication factor C large subunit
rifcsphigho2_01_scaffold_6709_3
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

1596..1829
-----------------
DNA (234bp)
protein (78aa)
hypothetical protein id=5046601 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_01_scaffold_6709_4
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

1801..2031
-----------------
DNA (231bp)
protein (77aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GHW0_9CYAN
hypothetical protein
rifcsphigho2_01_scaffold_6709_5
unknown

Not on your lists

2070..2279
-----------------
DNA (210bp)
protein (70aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6709_6
unknown

Not on your lists

comp(2276..2977)
-----------------
DNA (702bp)
protein (234aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6709_7
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


comp(3097..3822)
-----------------
DNA (726bp)
protein (242aa)
ASCG--Dimethyladenosine--transferase
Probable ribosomal RNA small subunit methyltransferase A id=4922277 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
ribosomal RNA small subunit methyltransferase A
rifcsphigho2_01_scaffold_6709_8
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


comp(3845..4027)
-----------------
DNA (183bp)
protein (61aa)
ASCG--DNA-directed--RNA--polymerase--subunit--N
DNA-directed RNA polymerase subunit N id=4922281 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
DNA-directed RNA polymerase subunit N
rifcsphigho2_01_scaffold_6709_9
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


comp(4050..4508)
-----------------
DNA (459bp)
protein (153aa)
ASCG--Ribosomal--protein--S9
BSCG--ribosomal--protein--S9
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=18248043 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
30S ribosomal protein S9
rifcsphigho2_01_scaffold_6709_10
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


comp(4511..4903)
-----------------
DNA (393bp)
protein (131aa)
ASCG--Ribosomal--protein--L13
50S ribosomal protein L13P id=4922284 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rpl13p; 50S ribosomal protein L13
rifcsphigho2_01_scaffold_6709_11
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


comp(4900..5244)
-----------------
DNA (345bp)
protein (115aa)
ASCG--Ribosomal--protein--L18e
LSU ribosomal protein L18AE id=18248041 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
50S ribosomal protein L18e
rifcsphigho2_01_scaffold_6709_12
unknown

Not on your lists

comp(5421..5636)
-----------------
DNA (216bp)
protein (72aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6709_13
unknown

Not on your lists

comp(5759..6112)
-----------------
DNA (354bp)
protein (118aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6709_14

Not on your lists

comp(6118..6894)
-----------------
DNA (777bp)
protein (259aa)
rpoD; DNA-directed RNA polymerase subunit D (EC:2.7.7.6)
DNA-directed RNA polymerase subunit D id=4922286 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsphigho2_01_scaffold_6709_15
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


comp(6907..7296)
-----------------
DNA (390bp)
protein (130aa)
BSCG--ribosomal--protein--S11
Putative ribosomal protein S11 id=4922287 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rps11p; 30S ribosomal protein S11
rifcsphigho2_01_scaffold_6709_16
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


comp(7341..7844)
-----------------
DNA (504bp)
protein (168aa)
BSCG--ribosomal--protein--S4
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=5042088 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
30S ribosomal protein S4
rifcsphigho2_01_scaffold_6709_17
unknown

Not on your lists

comp(7851..8060)
-----------------
DNA (210bp)
protein (70aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6709_18

Not on your lists


comp(8086..8655)
-----------------
DNA (570bp)
protein (190aa)
BSCG--ribosomal--protein--S13
ASCG--Ribosomal--protein--S13
30S ribosomal protein S13 id=4922290 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
30S ribosomal protein S13
rifcsphigho2_01_scaffold_6709_19
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


comp(8756..8962)
-----------------
DNA (207bp)
protein (69aa)
ASCG--Ribosomal--protein--S28e
30S ribosomal protein S28e id=4922292 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rps28e; 30S ribosomal protein S28
rifcsphigho2_01_scaffold_6709_20

Not on your lists


comp(9079..9393)
-----------------
DNA (315bp)
protein (105aa)
ASCG--Ribosomal--protein--L7Ae--L8e
50S ribosomal protein L7Ae; K02936 large subunit ribosomal protein L7Ae id=18248031 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
rpl7ae; 50S ribosomal protein L7
rifcsphigho2_01_scaffold_6709_21
Ferroglobus placidus, Ferroglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

9656..9865
-----------------
DNA (210bp)
protein (70aa)
30S ribosomal protein S27e n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RZL7_FERPA
ribosomal protein S27E
rifcsphigho2_01_scaffold_6709_22
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

9912..10664
-----------------
DNA (753bp)
protein (251aa)
translation initiation factor IF-2; K03237 translation initiation factor 2 subunit 1 id=18248027 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
translation initiation factor 2 subunit alpha (aeif-2a)
rifcsphigho2_01_scaffold_6709_23
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

10934..11701
-----------------
DNA (768bp)
protein (256aa)
Putative uncharacterized protein id=4922323 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein
rifcsphigho2_01_scaffold_6709_24
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

11934..12128
-----------------
DNA (195bp)
protein (65aa)
RNA polymerase Rpb6; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] id=18248024 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
RNA polymerase Rpb6
rifcsphigho2_01_scaffold_6709_25

Not on your lists


12147..12734
-----------------
DNA (588bp)
protein (196aa)
ASCG--Ribosomal--protein--S2
30S ribosomal protein S2 id=4922325 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
30S ribosomal protein S2
rifcsphigho2_01_scaffold_6709_26
unknown

Not on your lists

comp(12753..13613)
-----------------
DNA (861bp)
protein (287aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6709_27
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

comp(13863..14645)
-----------------
DNA (783bp)
protein (261aa)
ABC-2 type transporter n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZK0_9BACT
ABC transporter
rifcsphigho2_01_scaffold_6709_28
RHI_OP11_Levybacteria_38_12, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(14642..15562)
-----------------
DNA (921bp)
protein (307aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CJM8_9BACT
multidrug ABC transporter ATPase
rifcsphigho2_01_scaffold_6709_29
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


comp(15612..16136)
-----------------
DNA (525bp)
protein (175aa)
ASCG--Ribosomal--protein--L10e
rpl10e; 50S ribosomal protein L10e; K02866 large subunit ribosomal protein L10e id=18248019 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
LSU ribosomal protein L10AE
rifcsphigho2_01_scaffold_6709_30
unknown

Not on your lists

comp(16153..16482)
-----------------
DNA (330bp)
protein (110aa)

This feature has no annotations

Displaying items 1-30 of 34 in total

View Taxonomy