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rifcsphigho2_01_scaffold_13439

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_13439_1
AR10, Diapherotrites, DPANN, Archaea

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3..3086
-----------------
DNA (3084bp)
protein (1028aa)
PKD protein
PKD domain-containing protein id=5241468 bin=GW2011_AR10_complete species=Methanosalsum zhilinae genus=Methanosalsum taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
PKD domain-containing protein Tax=AR10
rifcsphigho2_01_scaffold_13439_2
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists


3343..4656
-----------------
DNA (1314bp)
protein (438aa)
signal recognition particle protein Srp54; K03106 signal recognition particle subunit SRP54 id=18248361 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
signal recognition particle protein Srp54; K03106 signal recognition particle subunit SRP54 Tax=AR5
GTP-binding signal recognition particle SRP54 G-domain-containing protein
rifcsphigho2_01_scaffold_13439_3
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4761..4994
-----------------
DNA (234bp)
protein (78aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PU07_METMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM32246.1}; TaxID=192952 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina ma
rifcsphigho2_01_scaffold_13439_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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4991..5257
-----------------
DNA (267bp)
protein (89aa)
Uncharacterized protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4ML36_9EURY
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
rifcsphigho2_01_scaffold_13439_5
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

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comp(5375..5881)
-----------------
DNA (507bp)
protein (169aa)
id=4203299 bin=PER_GWC2_41_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
rifcsphigho2_01_scaffold_13439_6
Ferroplasma sp. Type II, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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5985..7187
-----------------
DNA (1203bp)
protein (401aa)
Uncharacterized protein n=1 Tax=Ferroplasma sp. Type II RepID=T0LYC7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EQB72892.1}; TaxID=261388 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma; environmental samples.;" source="F
hypothetical protein
rifcsphigho2_01_scaffold_13439_7
CG_CPArch01-01, CG_CPArch01, Archaea

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comp(7272..7457)
-----------------
DNA (186bp)
protein (62aa)
id=4120975 bin=PER_GWC2_41_7 species=nanoarchaeote Nst1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nanoarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
id=4120975 Tax=CG_CPArch01-01
rifcsphigho2_01_scaffold_13439_8
Thermocrinis ruber, Thermocrinis, Aquificales, Aquificae, Aquificae, Bacteria

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comp(7462..8277)
-----------------
DNA (816bp)
protein (272aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=932678 species="Bacteria; Aquificae; Aquificales; Aquificaceae; Thermocrinis.;" source="T
protease
Protease HtpX homolog id=3652214 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
rifcsphigho2_01_scaffold_13439_9
RBG_19FT_COMBO_Euryarchaeota_56_21_curated, Euryarchaeota, Archaea

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comp(8283..8831)
-----------------
DNA (549bp)
protein (183aa)
adenylate kinase (EC:2.7.4.3) Tax=RBG_19FT_COMBO_Euryarchaeota_56_21_curated
adenylate kinase (EC:2.7.4.3)
Putative adenylate kinase id=4120971 bin=PER_GWC2_41_7 species=Methanothermus fervidus genus=Methanothermus taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsphigho2_01_scaffold_13439_10
unknown

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comp(8862..9209)
-----------------
DNA (348bp)
protein (116aa)

This feature has no annotations

rifcsphigho2_01_scaffold_13439_11
CG_Micra_05, Micraarchaeota, Archaea

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comp(9227..10498)
-----------------
DNA (1272bp)
protein (424aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] Tax=CG_Micra_05
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase id=4010273 bin=PER_GWC2_41_7 species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsphigho2_01_scaffold_13439_12
unknown

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10549..10824
-----------------
DNA (276bp)
protein (92aa)

This feature has no annotations

rifcsphigho2_01_scaffold_13439_13
R_RIF_OD1_05_43_15b, RIF-OD1-5, Parcubacteria, Bacteria

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10861..11466
-----------------
DNA (606bp)
protein (202aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_05_43_15b_curated
rifcsphigho2_01_scaffold_13439_14
AR10, Diapherotrites, DPANN, Archaea

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11423..13132
-----------------
DNA (1710bp)
protein (570aa)
thymidylate synthase
thymidylate synthase id=5240949 bin=GW2011_AR10_complete species=Fischerella sp. JSC-11 genus=Fischerella taxon_order=Stigonematales taxon_class=unknown phylum=Cyanobacteria tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
thymidylate synthase Tax=AR10
rifcsphigho2_01_scaffold_13439_15

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13137..14456
-----------------
DNA (1320bp)
protein (440aa)
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=uncultured archaeon GZfos13E1 RepID=Q64E81_9ARCH rbh
Dihydroorotase {ECO:0000313|EMBL:AAU82296.1}; TaxID=285397 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos13E1.;"
rifcsphigho2_01_scaffold_13439_16
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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14571..16751
-----------------
DNA (2181bp)
protein (727aa)
Elongation factor 2 n=1 Tax=Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) RepID=C9RDK2_METVM
translation elongation factor aEF-2; K03234 elongation factor 2 Tax=RBG_16_Micrarchaeota_49_10_curated
elongation factor EF-2
rifcsphigho2_01_scaffold_13439_17

Not on your lists

17052..18218
-----------------
DNA (1167bp)
protein (389aa)
DEAD/DEAH box helicase-like protein id=5044467 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
DEAD/DEAH box helicase-like protein {ECO:0000313|EMBL:KHO48403.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
ATP-dependent RNA helicase
rifcsphigho2_01_scaffold_13439_18
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

18193..19620
-----------------
DNA (1428bp)
protein (476aa)
amidophosphoribosyltransferase (EC:2.4.2.14)
amidophosphoribosyltransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14] id=5041866 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
amidophosphoribosyltransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14] Tax=AR4
rifcsphigho2_01_scaffold_13439_19
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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19893..21155
-----------------
DNA (1263bp)
protein (421aa)
ef1a, tuf; elongation factor 1-alpha (EC:3.6.5.3); K03231 elongation factor 1-alpha Tax=RBG_16_Micrarchaeota_36_9_curated
Elongation factor 1-alpha id=4010240 bin=PER_GWC2_41_7 species=unknown genus=Thermoplasma taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Elongation factor 1-alpha
rifcsphigho2_01_scaffold_13439_20
unknown

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21219..21467
-----------------
DNA (249bp)
protein (83aa)

This feature has no annotations

rifcsphigho2_01_scaffold_13439_21

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21708..22034
-----------------
DNA (327bp)
protein (109aa)
30S ribosomal protein S10 id=4010246 bin=PER_GWC2_41_7 species=Methanohalobium evestigatum genus=Methanohalobium taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508, ECO:0000256|SAAS:SAAS00243320}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
SSU ribosomal protein S20e (S10p)
rifcsphigho2_01_scaffold_13439_22
unknown

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22040..22246
-----------------
DNA (207bp)
protein (69aa)

This feature has no annotations

Displaying 22 items

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