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rifcsphigho2_01_scaffold_17184

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_17184_1

Not on your lists

comp(2..895)
-----------------
DNA (894bp)
protein (298aa)
Lysylphosphatidylglycerol synthetase/UPF0104 id=3922012 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Uncharacterized protein {ECO:0000313|EMBL:KHO47483.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
hypothetical protein
rifcsphigho2_01_scaffold_17184_2
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

976..2139
-----------------
DNA (1164bp)
protein (388aa)
transmembrane oligosaccharyl transferase; K07151 dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC:2.4.1.119] id=18248643 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
transmembrane oligosaccharyl transferase; K07151 dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC:2.4.1.119] Tax=AR5
Oligosaccharyl transferase, STT3 subunit
rifcsphigho2_01_scaffold_17184_3

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2144..2782
-----------------
DNA (639bp)
protein (213aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VWJ4_9EURY
Marine sediment metagenome DNA, contig: S06H3_S10947 {ECO:0000313|EMBL:GAI44636.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
methionine biosynthesis protein MetW
rifcsphigho2_01_scaffold_17184_4
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

2788..3708
-----------------
DNA (921bp)
protein (307aa)
oligosaccharyl transferase STT3 subunit; K07151 dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC:2.4.1.119] id=18248642 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
oligosaccharyl transferase STT3 subunit; K07151 dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC:2.4.1.119] Tax=AR5
hypothetical protein
rifcsphigho2_01_scaffold_17184_5
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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3749..4855
-----------------
DNA (1107bp)
protein (369aa)
LPS biosynthesis rfbu related protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HN26_PYRSN
LPS biosynthesis rfbu-like protein
LPS biosynthesis rfbu related protein {ECO:0000313|EMBL:AEC52030.1}; TaxID=342949 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (s
rifcsphigho2_01_scaffold_17184_6

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4857..6374
-----------------
DNA (1518bp)
protein (506aa)
polysaccharide biosynthesis protein id=5043091 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:KHO47450.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
polysaccharide biosynthesis protein
rifcsphigho2_01_scaffold_17184_7
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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6508..7449
-----------------
DNA (942bp)
protein (314aa)
NAD-dependent epimerase/dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=RBG_13_Chloroflexi_51_36_curated
GDPmannose 4,6-dehydratase (EC:4.2.1.47)
NAD-dependent epimerase/dehydratase n=1 Tax=Paenibacillus curdlanolyticus YK9 RepID=E0IFM3_9BACL id=1242739 bin=RBG2 species=Paenibacillus curdlanolyticus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG2 organism_group=Chloroflexi
rifcsphigho2_01_scaffold_17184_8
RBG_13_OP11_Levybacteria_35_9_curated, Levybacteria, Microgenomates, Bacteria

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7480..7665
-----------------
DNA (186bp)
protein (62aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] Tax=RBG_13_OP11_Levybacteria_35_9_curated
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CAT4_9BACT
rifcsphigho2_01_scaffold_17184_9
Candidatus Omnitrophus sp. SKK-01, Candidatus Omnitrophus, Omnitrophica, Bacteria

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7743..8081
-----------------
DNA (339bp)
protein (113aa)
Glucose-1-phosphate thymidyltransferase n=1 Tax=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) RepID=A8F3Y9_THELT
Glucose-1-phosphate thymidylyltransferase {ECO:0000313|EMBL:KJJ84007.1}; TaxID=1609969 species="Bacteria; Omnitrophica; Candidatus Omnitrophus.;" source="Candidatus Omnitrophus sp. SKK-01.;"
glucose-1-phosphate thymidylyltransferase
rifcsphigho2_01_scaffold_17184_10
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8088..8783)
-----------------
DNA (696bp)
protein (232aa)
Dolichol-P-glucose synthetase, putative n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O29674_ARCFU
Dolichol-P-glucose synthetase {ECO:0000313|EMBL:AKB34197.1}; TaxID=1434119 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosar
hypothetical protein
rifcsphigho2_01_scaffold_17184_11
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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8865..9815
-----------------
DNA (951bp)
protein (317aa)
dTDP-glucose 4,6-dehydratase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z267_METPS
rfbB; dTDP-glucose 4,6-dehydratase
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:BAI62789.1}; TaxID=304371 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella palud
rifcsphigho2_01_scaffold_17184_12
CG_CPR01_01, CG_CPR01, Bacteria

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9812..10708
-----------------
DNA (897bp)
protein (299aa)
NAD-dependent epimerase/dehydratase Tax=CG_CPR01_01
NAD-dependent epimerase/dehydratase id=5098269 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
NAD-dependent epimerase/dehydratase
rifcsphigho2_01_scaffold_17184_13
unknown

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comp(10705..12507)
-----------------
DNA (1803bp)
protein (601aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17184_14
R_RIF_OD1_07_47_12, RIF-OD1-7, Parcubacteria, Bacteria

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comp(12504..13076)
-----------------
DNA (573bp)
protein (191aa)
Methyltransferase type 11 n=1 Tax=uncultured bacterium RepID=K2AT49_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_07_47_12_curated
hypothetical protein
rifcsphigho2_01_scaffold_17184_15
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(13087..14070)
-----------------
DNA (984bp)
protein (328aa)
Glycosyltransferase n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6TZX3_9EURY
Glycosyltransferase {ECO:0000313|EMBL:EKQ52937.1}; TaxID=1220534 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium
LPS glycosyltransferase, putative
rifcsphigho2_01_scaffold_17184_16
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(14115..15077)
-----------------
DNA (963bp)
protein (321aa)
exopolysaccharide phosphotransferase (EC:2.7.-.-)
Glycosyltransferase n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6TZX3_9EURY
Glycosyltransferase {ECO:0000313|EMBL:EKQ52937.1}; TaxID=1220534 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium
rifcsphigho2_01_scaffold_17184_17
AR5, Aenigmarchaeota, DPANN, Archaea

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15282..16235
-----------------
DNA (954bp)
protein (318aa)
dTDP-glucose 4,6-dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] id=5043081 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
dTDP-glucose 4,6-dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=AR5
UDP-glucose 4-epimerase (EC:5.1.3.2)
rifcsphigho2_01_scaffold_17184_18
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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16232..17170
-----------------
DNA (939bp)
protein (313aa)
glycosyltransferase group 2 family protein (EC:2.4.-.-)
hypothetical protein n=1 Tax=unclassified candidate division KSB1 RepID=UPI00035F580C
glycosyl transferase family 2 Tax=RBG_13_Nitrospirae_39_12_curated
rifcsphigho2_01_scaffold_17184_19
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

17172..18266
-----------------
DNA (1095bp)
protein (365aa)
group 1 glycosyl transferase id=5043089 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
group 1 glycosyl transferase Tax=AR5
N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein Spt14
rifcsphigho2_01_scaffold_17184_20

Not on your lists

comp(18258..19181)
-----------------
DNA (924bp)
protein (308aa)
Nucleoside-diphosphate-sugar epimerase id=4935123 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:KHO47446.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
hypothetical protein
rifcsphigho2_01_scaffold_17184_21

Not on your lists

comp(19178..20461)
-----------------
DNA (1284bp)
protein (428aa)
Mannose-1-phosphate guanylyltransferase, phosphomannomutase {ECO:0000313|EMBL:KHO47445.1}; EC=2.7.7.13 {ECO:0000313|EMBL:KHO47445.1};; EC=5.4.2.8 {ECO:0000313|EMBL:KHO47445.1};; TaxID=1579367 species=
Putative uncharacterized protein id=4935151 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
nucleotidyltransferase
rifcsphigho2_01_scaffold_17184_22
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20477..22069)
-----------------
DNA (1593bp)
protein (531aa)
GHMP kinase id=4935152 bin=PER_GWC2_41_7 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
GHMP kinase {ECO:0000313|EMBL:EFL50649.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosi
sugar kinase
rifcsphigho2_01_scaffold_17184_23

Not on your lists

22184..23008
-----------------
DNA (825bp)
protein (275aa)
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:KHO47442.1}; EC=2.7.7.13 {ECO:0000313|EMBL:KHO47442.1};; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
nucleotidyltransferase (EC:2.7.7.13)
Nucleotidyl transferase id=4935153 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsphigho2_01_scaffold_17184_24
unknown

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23043..23654
-----------------
DNA (612bp)
protein (204aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17184_25
AR5, Aenigmarchaeota, DPANN, Archaea

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23641..24468
-----------------
DNA (828bp)
protein (276aa)
Putative uncharacterized protein id=4935156 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein Tax=AR5
hypothetical protein
rifcsphigho2_01_scaffold_17184_26

Not on your lists

24455..25105
-----------------
DNA (651bp)
protein (217aa)
beta-lactamase id=5043102 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Hydrolase {ECO:0000313|EMBL:KHO47439.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
Zn-dependent hydrolase
rifcsphigho2_01_scaffold_17184_27
unknown

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25116..25253
-----------------
DNA (138bp)
protein (46aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17184_28
GWA2_RIF03_38_11_curated, RIF3, Bacteria

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comp(25266..25535)
-----------------
DNA (270bp)
protein (90aa)
RCL1; RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4); K01974 RNA 3'-terminal phosphate cyclase [EC:6.5.1.4] Tax=GWA2_RIF03_38_11_curated
RNA 3'-terminal phosphate cyclase (EC:6.5.1.4)
RNA 3'-phosphate cyclase id=4935160 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsphigho2_01_scaffold_17184_29
Methanohalophilus mahii, Methanohalophilus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(25580..26047)
-----------------
DNA (468bp)
protein (156aa)
RNA 3'-phosphate cyclase (EC:6.5.1.4)
RNA 3'-terminal phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200}; Short=RNA cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; Short=RNA-3'-phosphate cyclase {ECO:0000256|HAMAP-Rule:MF_00200};; EC=6.5.1.4
RNA 3'-phosphate cyclase n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EBN3_METMS
Displaying 29 items

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