ggKbase home page

rifcsphigho2_01_scaffold_17884

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_17884_1
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(2..1033)
-----------------
DNA (1032bp)
protein (344aa)
argD; 4-aminobutyrate aminotransferase (EC:2.6.1.19)
argD; acetylornithine aminotransferase; K00823 4-aminobutyrate aminotransferase [EC:2.6.1.19] id=5241609 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
argD; acetylornithine aminotransferase; K00823 4-aminobutyrate aminotransferase [EC:2.6.1.19] Tax=AR10
rifcsphigho2_01_scaffold_17884_2
unknown

Not on your lists

comp(1066..2877)
-----------------
DNA (1812bp)
protein (604aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17884_3
unknown

Not on your lists

comp(2886..3143)
-----------------
DNA (258bp)
protein (86aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17884_4
GWC2_OD1_53_7, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3214..4752)
-----------------
DNA (1539bp)
protein (513aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW34780.1}; Flags: Fragment;; TaxID=1618986 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_53_7.;"
Putative uncharacterized protein id=4702244 bin=GWC2_Geobacteraceae_55_20 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
rifcsphigho2_01_scaffold_17884_5
unknown

Not on your lists

comp(4940..5578)
-----------------
DNA (639bp)
protein (213aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17884_6
R_OD1_Nomurabacteria_41_52b, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(5655..7424)
-----------------
DNA (1770bp)
protein (590aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46BK4_METBF
pulQ; type II secretion system secretin lipoprotein PulQ; K02453 general secretion pathway protein D Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_41_52b_curated
hypothetical protein
rifcsphigho2_01_scaffold_17884_7
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

7819..8736
-----------------
DNA (918bp)
protein (306aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798
Thioredoxin reductase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBG9_THET1
thioredoxin reductase
rifcsphigho2_01_scaffold_17884_8
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

8776..10227
-----------------
DNA (1452bp)
protein (484aa)
aldH; aldehyde dehydrogenase NAD+ (EC:1.2.1.3)
aldH; aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] id=5241608 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Aldehyde dehydrogenase Tax=CG_Aenigma_01
rifcsphigho2_01_scaffold_17884_9
R_OP11_Levybacteria_37_13, Levybacteria, Microgenomates, Bacteria

Not on your lists

10251..10781
-----------------
DNA (531bp)
protein (177aa)
dihydrofolate reductase region; K00287 dihydrofolate reductase [EC:1.5.1.3] Tax=RIFCSPHIGHO2_02_FULL_OP11_Levybacteria_37_13_curated
dihydrofolate reductase region; K00287 dihydrofolate reductase [EC:1.5.1.3] id=71653 bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
dihydrofolate reductase region
rifcsphigho2_01_scaffold_17884_10
Thermoplasmatales archaeon SCGC AB-540-F20, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(10807..11682)
-----------------
DNA (876bp)
protein (292aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EMR75660.1}; EC=1.1.1.35 {ECO:0000313|EMBL:EMR75660.1};; TaxID=1242866 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="T
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7UAB5_9EURY
rifcsphigho2_01_scaffold_17884_11
CG_CPR16-01, CG_CPR16, Bacteria

Not on your lists

comp(11721..11939)
-----------------
DNA (219bp)
protein (73aa)
hypothetical protein Tax=CG_CPR16-01
UPF0235 protein LYNGBM3L_14430 id=4727199 bin=GWC2_OP3-like_45_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
hypothetical protein
rifcsphigho2_01_scaffold_17884_12
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11936..12652)
-----------------
DNA (717bp)
protein (239aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:EFU85136.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EFU85136.1};; TaxID=525377 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;
3-oxoacyl-[acyl-carrier protein] reductase n=5 Tax=Staphylococcus lugdunensis RepID=D3QDG3_STALH
rifcsphigho2_01_scaffold_17884_13
unknown

Not on your lists

comp(12665..12922)
-----------------
DNA (258bp)
protein (86aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17884_14
unknown

Not on your lists

comp(12925..13239)
-----------------
DNA (315bp)
protein (105aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17884_15
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

comp(13343..13858)
-----------------
DNA (516bp)
protein (172aa)
endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] Tax=RBG_16_Micrarchaeota_36_9_curated
endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] id=18248528 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
endonuclease III (EC:3.2.2.-)
rifcsphigho2_01_scaffold_17884_16
CG_CPR10_03, CG_CPR10, Bacteria

Not on your lists

13910..14746
-----------------
DNA (837bp)
protein (279aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036F891B
putative sugar kinase Tax=CG_CPR10_03
carbohydrate kinase
rifcsphigho2_01_scaffold_17884_17
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

comp(14778..15185)
-----------------
DNA (408bp)
protein (136aa)
UPI0003D5E1C5 related cluster n=1 Tax=unknown RepID=UPI0003D5E1C5
twitching motility protein PilT Tax=RBG_16_Micrarchaeota_49_10_curated
twitching motility protein PilT
rifcsphigho2_01_scaffold_17884_18
unknown

Not on your lists

comp(15200..15454)
-----------------
DNA (255bp)
protein (85aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17884_19

Not on your lists

comp(15545..16462)
-----------------
DNA (918bp)
protein (306aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
ornithine carbamoyltransferase (EC:2.1.3.3); K00611 ornithine carbamoyltransferase [EC:2.1.3.3] id=5240722 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109};; TaxID=1579370 species="Archaea.;" sour
rifcsphigho2_01_scaffold_17884_20
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16468..17793)
-----------------
DNA (1326bp)
protein (442aa)
Cobalamin synthesis protein P47K n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LV59_TEPAE
cobalamin synthesis protein P47K
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:CCP27685.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="T
rifcsphigho2_01_scaffold_17884_21
AR6, Pacearchaeaota, DPANN, Archaea

Not on your lists

comp(17910..18836)
-----------------
DNA (927bp)
protein (309aa)
arcC; carbamate kinase-like carbamoyl phosphate synthetase; K00926 carbamate kinase [EC:2.7.2.2] Tax=AR6
Carbamate kinase n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IGT0_ACIB4 id=5103487 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Carbamate kinase
rifcsphigho2_01_scaffold_17884_22
R_OD1_Wolfebacteria_47_17b, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(18872..19105)
-----------------
DNA (234bp)
protein (78aa)
Glutaredoxin-like protein, YruB-family id=2698725 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
glutaredoxin-like protein Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_47_17b_curated
hypothetical protein
rifcsphigho2_01_scaffold_17884_23
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

19439..20335
-----------------
DNA (897bp)
protein (299aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=2162 species="Archaea; Euryarch
Shikimate dehydrogenase n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6UA99_9EURY
aroE; shikimate 5-dehydrogenase
rifcsphigho2_01_scaffold_17884_24
unknown

Not on your lists

20373..20687
-----------------
DNA (315bp)
protein (105aa)

This feature has no annotations

rifcsphigho2_01_scaffold_17884_25
R_OP11_Levybacteria_36_15, Levybacteria, Microgenomates, Bacteria

Not on your lists

20699..21889
-----------------
DNA (1191bp)
protein (397aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=RIFCSPHIGHO2_01_FULL_OP11_Levybacteria_36_15_curated
malate dehydrogenase oxaloacetate-decarboxylating (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate-decarboxylating) id=2698727 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsphigho2_01_scaffold_17884_26
R_Planctomycetes_50_16, Planctomycetes, Bacteria

Not on your lists

comp(22283..23422)
-----------------
DNA (1140bp)
protein (380aa)
glutamate dehydrogenase (NAD(P)(+)) (EC:1.4.1.3); K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
glutamate dehydrogenase (NADP)+ (EC:1.4.1.3)
glutamate dehydrogenase (NAD(P)(+)) (EC:1.4.1.3); K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] id=5240704 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_01_scaffold_17884_27
unknown

Not on your lists

23490..23732
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

Displaying 27 items

View Taxonomy