ggKbase home page

rifcsphigho2_01_scaffold_8813

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_8813_1
RBG_13_Lokiarchaeota_45_8_curated, Lokiarchaeota, Archaea

Not on your lists

comp(104..517)
-----------------
DNA (414bp)
protein (138aa)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Streptomyces sp. CNS615 RepID=UPI000369F6F5
hypothetical protein Tax=RBG_13_Lokiarchaeota_45_8_curated
hypothetical protein
rifcsphigho2_01_scaffold_8813_2
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

550..1374
-----------------
DNA (825bp)
protein (275aa)
RNA methylase (EC:2.1.1.29) Tax=AR17
Nucleolar protein I id=3673820 bin=PER_GWC2_41_7 species=Thermococcus litoralis genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein
rifcsphigho2_01_scaffold_8813_3
RHI_OP11_Daviesbacteria_37_16, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

1389..1907
-----------------
DNA (519bp)
protein (173aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFCSPHIGHO2_12_FULL_OP11_Daviesbacteria_37_16_curated
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DCE8_9BACT
rifcsphigho2_01_scaffold_8813_4
unknown

Not on your lists

comp(1908..2366)
-----------------
DNA (459bp)
protein (153aa)

This feature has no annotations

rifcsphigho2_01_scaffold_8813_5
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

2522..4264
-----------------
DNA (1743bp)
protein (581aa)
Probable translation initiation factor IF-2 id=4010259 bin=PER_GWC2_41_7 species=Methanothermus fervidus genus=Methanothermus taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
InfB_2; translation initiation factor IF-2
Probable translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; TaxID=190192 species="Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus.;" source="Metha
rifcsphigho2_01_scaffold_8813_6
GWA2_OD1_45_9, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

4265..4744
-----------------
DNA (480bp)
protein (160aa)
hypothetical protein n=1 Tax=candidate division YNPFFA RepID=UPI00035F9B52
Nuclear protein SET {ECO:0000313|EMBL:KKU15572.1}; TaxID=1618663 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWA2_45_9.;"
nuclear protein SET
rifcsphigho2_01_scaffold_8813_7
Thermoplasma volcanium, Thermoplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

4930..5277
-----------------
DNA (348bp)
protein (116aa)
S-adenosylmethionine decarboxylase proenzyme (EC:4.1.1.50)
S-adenosylmethionine decarboxylase proenzyme {ECO:0000255|HAMAP-Rule:MF_00464}; Short=AdoMetDC {ECO:0000255|HAMAP-Rule:MF_00464};; Short=SAMDC {ECO:0000255|HAMAP-Rule:MF_00464};; EC=4.1.1.50 {ECO:0000
S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) RepID=SPEH_THEVO
rifcsphigho2_01_scaffold_8813_8
Thermofilum sp. 1807-2, Thermofilum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(5309..6166)
-----------------
DNA (858bp)
protein (286aa)
spermidine synthase, SpeE (EC:2.5.1.16)
Probable spermidine synthase n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BIX4_HYPBU
Spermidine synthase {ECO:0000313|EMBL:AKG39269.1}; TaxID=1550241 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum.;" source="Thermofilum sp. 1807-2.;"
rifcsphigho2_01_scaffold_8813_9
GWC2_OD1_53_7, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists


6301..6762
-----------------
DNA (462bp)
protein (154aa)
30S ribosomal protein S6e id=4010277 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
30S ribosomal protein S6e {ECO:0000313|EMBL:KKW34783.1}; TaxID=1618986 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_53_7.;"
30S ribosomal protein S6e
rifcsphigho2_01_scaffold_8813_10
GWC2_OD1_53_7, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists


6763..7992
-----------------
DNA (1230bp)
protein (410aa)
Translation initiation factor 2 subunit gamma {ECO:0000313|EMBL:KKW34782.1}; TaxID=1618986 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_53_7.;"
Translation initiation factor 2, gamma subunit, eIF-2gamma; GTPase id=4010279 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
translation initiation factor 2 subunit gamma
rifcsphigho2_01_scaffold_8813_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8072..8281)
-----------------
DNA (210bp)
protein (70aa)
hypothetical protein
Uncharacterized conserved small protein {ECO:0000313|EMBL:KCZ70801.1}; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Met
Putative uncharacterized protein id=4010234 bin=PER_GWC2_41_7 species=uncultured archaeon GZfos23H7 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsphigho2_01_scaffold_8813_12

Not on your lists

comp(8287..8520)
-----------------
DNA (234bp)
protein (78aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T0YBB5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD32521.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rifcsphigho2_01_scaffold_8813_13
unknown

Not on your lists

8841..8987
-----------------
DNA (147bp)
protein (49aa)

This feature has no annotations

rifcsphigho2_01_scaffold_8813_14

Not on your lists

9044..9493
-----------------
DNA (450bp)
protein (150aa)
Marine sediment metagenome DNA, contig: S01H1_L02118 {ECO:0000313|EMBL:GAF70502.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_01_scaffold_8813_15
unknown

Not on your lists

9647..9757
-----------------
DNA (111bp)
protein (37aa)

This feature has no annotations

rifcsphigho2_01_scaffold_8813_16

Not on your lists

comp(9754..10221)
-----------------
DNA (468bp)
protein (156aa)
Death on curing protein {ECO:0000313|EMBL:KHO49893.1}; TaxID=1579368 species="Archaea.;" source="archaeon GW2011_AR6.;"
id=5050394 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
death on curing protein
rifcsphigho2_01_scaffold_8813_17
RBG_13_Euryarchaeota_31_8_curated, Euryarchaeota, Archaea

Not on your lists

10276..11160
-----------------
DNA (885bp)
protein (295aa)
cation efflux family protein Tax=RBG_13_Euryarchaeota_31_8_curated
Cation efflux family protein id=4329427 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
cation diffusion facilitator family transporter
rifcsphigho2_01_scaffold_8813_18
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(11227..11955)
-----------------
DNA (729bp)
protein (243aa)
Uncharacterized protein id=4010368 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Uncharacterized protein {ECO:0000313|EMBL:EGG42358.1}; TaxID=886738 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarcha
exported protein of unknown function
rifcsphigho2_01_scaffold_8813_19
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(12001..12450)
-----------------
DNA (450bp)
protein (150aa)
hypothetical protein
transmembrane_regions id=5240654 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
transmembrane_regions Tax=AR10
rifcsphigho2_01_scaffold_8813_20
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(12455..13207)
-----------------
DNA (753bp)
protein (251aa)
DSBA oxidoreductase id=14427050 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
DSBA oxidoreductase Tax=CSP1_1_Thaumarchaeota
DSBA oxidoreductase
rifcsphigho2_01_scaffold_8813_21
R_RIF_OD1_07_47_27, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(13287..15383)
-----------------
DNA (2097bp)
protein (699aa)
copA; copper-exporting P-type ATPase A (EC:3.6.3.-) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_47_27_curated
copA; copper-exporting P-type ATPase A (EC:3.6.3.-)
hypothetical protein n=1 Tax=Crenarchaeota archaeon SCGC AAA471-B05 RepID=UPI000379038C
rifcsphigho2_01_scaffold_8813_22
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

comp(15503..15748)
-----------------
DNA (246bp)
protein (82aa)
Tax=RBG_16_Micrarchaeota_49_10_curated
rifcsphigho2_01_scaffold_8813_23
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

comp(15750..15974)
-----------------
DNA (225bp)
protein (75aa)
hypothetical protein
id=2898912 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
id=2898912 Tax=RBG_16_Micrarchaeota_49_10_curated
rifcsphigho2_01_scaffold_8813_24
GWF2_OD1_35_39, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(16023..16283)
-----------------
DNA (261bp)
protein (87aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKP79797.1}; TaxID=1618721 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWF2_35_39.;"
Putative uncharacterized protein id=2898907 bin=PER_GWC2_41_7 species=Legionella drancourtii genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Displaying 24 items

View Taxonomy